Definition Sphingopyxis alaskensis RB2256, complete genome.
Accession NC_008048
Length 3,345,170

Click here to switch to the map view.

The map label for this gene is 103486225

Identifier: 103486225

GI number: 103486225

Start: 737807

End: 738535

Strand: Reverse

Name: 103486225

Synonym: Sala_0732

Alternate gene names: NA

Gene position: 738535-737807 (Counterclockwise)

Preceding gene: 103486226

Following gene: 103486224

Centisome position: 22.08

GC content: 65.71

Gene sequence:

>729_bases
ATGAAATCCAATTTGCTCGTGGGCGCCGTTGCGCTCGCGCTCGTCGCGCATGCTTTCGGTCCGGCCACCGCGCAGAACGC
GCCCGTCGTTCCAGCGTCGGCCGACGCCGCGCCGGCGCTTGTCGCGATGCCCGTCGCCGCTCCGACCACGAATCCCGTGC
GCATGCTGCCCGCCAATACCGAAGTGTTGCTCAGCATGAACGAGGAACTATCGACCAAGAAGAATGGGGAGGGCGACACC
TTCTACATGACCGTCCTTCATAATGTGGTGCAGGACGGCTTCATCGTGATTCCGAAGGGCGCGCGCGCGACCGGCGAAGT
CACATGGAAGACCGGCAAGGGCGCCTTCGGTAAGTCGGGCAAAATGGAAATCGAGGTGCGCTACGTCGATGTCGGCGGAA
ATCGCATCCCGTTAATTGGCACCTTCCGCCAGGAAGGCGAAGGCAACACCGTCGCGACGGTGGCCGCTGTCGCCCTCGTT
TGGGTCGCCGCGCCCTTTATCACCGGCAAGACCGGCCGAATCCCGGCGGGTCGCGAACTTAGCGTCCGCACCAAGGAAGA
GCTCGCCTTTGCGGTTCCCGCGGGCGCAGCGGCGGCGAAGCCCGCACTGATGGCGGTCGCGGTCGAAGCCGCGCCGGTTG
CCGCCATTCCTGTCGCAGCGCCTCCGCCAGTGCCTGCCGCAGTTCCGACGTCGAGCCCAGACACAACGCCAGCGACCGAG
GGCCGATGA

Upstream 100 bases:

>100_bases
TGGCACCGCGCCGAATGTTAACGCGGTTGACCGGCCGCGCATTTCCTGATTTGCACGGCGCACGGCGAGCAGGGGGCTTG
CTGGTTTGGGGGTTGTTTTC

Downstream 100 bases:

>100_bases
TCCGGCGGGTTCGGGCGCATTTGTCGGAGCCCGAACCCCGCCAAAAAAAAAAACGCTTTCCTACATGTTCCTTTTATGTT
CCAAACTGTCCAATGAGCAA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 242; Mature: 242

Protein sequence:

>242_residues
MKSNLLVGAVALALVAHAFGPATAQNAPVVPASADAAPALVAMPVAAPTTNPVRMLPANTEVLLSMNEELSTKKNGEGDT
FYMTVLHNVVQDGFIVIPKGARATGEVTWKTGKGAFGKSGKMEIEVRYVDVGGNRIPLIGTFRQEGEGNTVATVAAVALV
WVAAPFITGKTGRIPAGRELSVRTKEELAFAVPAGAAAAKPALMAVAVEAAPVAAIPVAAPPPVPAAVPTSSPDTTPATE
GR

Sequences:

>Translated_242_residues
MKSNLLVGAVALALVAHAFGPATAQNAPVVPASADAAPALVAMPVAAPTTNPVRMLPANTEVLLSMNEELSTKKNGEGDT
FYMTVLHNVVQDGFIVIPKGARATGEVTWKTGKGAFGKSGKMEIEVRYVDVGGNRIPLIGTFRQEGEGNTVATVAAVALV
WVAAPFITGKTGRIPAGRELSVRTKEELAFAVPAGAAAAKPALMAVAVEAAPVAAIPVAAPPPVPAAVPTSSPDTTPATE
GR
>Mature_242_residues
MKSNLLVGAVALALVAHAFGPATAQNAPVVPASADAAPALVAMPVAAPTTNPVRMLPANTEVLLSMNEELSTKKNGEGDT
FYMTVLHNVVQDGFIVIPKGARATGEVTWKTGKGAFGKSGKMEIEVRYVDVGGNRIPLIGTFRQEGEGNTVATVAAVALV
WVAAPFITGKTGRIPAGRELSVRTKEELAFAVPAGAAAAKPALMAVAVEAAPVAAIPVAAPPPVPAAVPTSSPDTTPATE
GR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 24547; Mature: 24547

Theoretical pI: Translated: 8.97; Mature: 8.97

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKSNLLVGAVALALVAHAFGPATAQNAPVVPASADAAPALVAMPVAAPTTNPVRMLPANT
CCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCEEEECCCC
EVLLSMNEELSTKKNGEGDTFYMTVLHNVVQDGFIVIPKGARATGEVTWKTGKGAFGKSG
EEEEEECCHHCCCCCCCCCEEHHHHHHHHHHCCEEEEECCCCCCCEEEEECCCCCCCCCC
KMEIEVRYVDVGGNRIPLIGTFRQEGEGNTVATVAAVALVWVAAPFITGKTGRIPAGREL
CEEEEEEEEECCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCEE
SVRTKEELAFAVPAGAAAAKPALMAVAVEAAPVAAIPVAAPPPVPAAVPTSSPDTTPATE
EEEEHHHEEEECCCCCCCCCCEEEEEEECCCCEEEECCCCCCCCCCCCCCCCCCCCCCCC
GR
CC
>Mature Secondary Structure
MKSNLLVGAVALALVAHAFGPATAQNAPVVPASADAAPALVAMPVAAPTTNPVRMLPANT
CCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCEEEECCCC
EVLLSMNEELSTKKNGEGDTFYMTVLHNVVQDGFIVIPKGARATGEVTWKTGKGAFGKSG
EEEEEECCHHCCCCCCCCCEEHHHHHHHHHHCCEEEEECCCCCCCEEEEECCCCCCCCCC
KMEIEVRYVDVGGNRIPLIGTFRQEGEGNTVATVAAVALVWVAAPFITGKTGRIPAGREL
CEEEEEEEEECCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCEE
SVRTKEELAFAVPAGAAAAKPALMAVAVEAAPVAAIPVAAPPPVPAAVPTSSPDTTPATE
EEEEHHHEEEECCCCCCCCCCEEEEEEECCCCEEEECCCCCCCCCCCCCCCCCCCCCCCC
GR
CC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA