| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is 103486225
Identifier: 103486225
GI number: 103486225
Start: 737807
End: 738535
Strand: Reverse
Name: 103486225
Synonym: Sala_0732
Alternate gene names: NA
Gene position: 738535-737807 (Counterclockwise)
Preceding gene: 103486226
Following gene: 103486224
Centisome position: 22.08
GC content: 65.71
Gene sequence:
>729_bases ATGAAATCCAATTTGCTCGTGGGCGCCGTTGCGCTCGCGCTCGTCGCGCATGCTTTCGGTCCGGCCACCGCGCAGAACGC GCCCGTCGTTCCAGCGTCGGCCGACGCCGCGCCGGCGCTTGTCGCGATGCCCGTCGCCGCTCCGACCACGAATCCCGTGC GCATGCTGCCCGCCAATACCGAAGTGTTGCTCAGCATGAACGAGGAACTATCGACCAAGAAGAATGGGGAGGGCGACACC TTCTACATGACCGTCCTTCATAATGTGGTGCAGGACGGCTTCATCGTGATTCCGAAGGGCGCGCGCGCGACCGGCGAAGT CACATGGAAGACCGGCAAGGGCGCCTTCGGTAAGTCGGGCAAAATGGAAATCGAGGTGCGCTACGTCGATGTCGGCGGAA ATCGCATCCCGTTAATTGGCACCTTCCGCCAGGAAGGCGAAGGCAACACCGTCGCGACGGTGGCCGCTGTCGCCCTCGTT TGGGTCGCCGCGCCCTTTATCACCGGCAAGACCGGCCGAATCCCGGCGGGTCGCGAACTTAGCGTCCGCACCAAGGAAGA GCTCGCCTTTGCGGTTCCCGCGGGCGCAGCGGCGGCGAAGCCCGCACTGATGGCGGTCGCGGTCGAAGCCGCGCCGGTTG CCGCCATTCCTGTCGCAGCGCCTCCGCCAGTGCCTGCCGCAGTTCCGACGTCGAGCCCAGACACAACGCCAGCGACCGAG GGCCGATGA
Upstream 100 bases:
>100_bases TGGCACCGCGCCGAATGTTAACGCGGTTGACCGGCCGCGCATTTCCTGATTTGCACGGCGCACGGCGAGCAGGGGGCTTG CTGGTTTGGGGGTTGTTTTC
Downstream 100 bases:
>100_bases TCCGGCGGGTTCGGGCGCATTTGTCGGAGCCCGAACCCCGCCAAAAAAAAAAACGCTTTCCTACATGTTCCTTTTATGTT CCAAACTGTCCAATGAGCAA
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 242; Mature: 242
Protein sequence:
>242_residues MKSNLLVGAVALALVAHAFGPATAQNAPVVPASADAAPALVAMPVAAPTTNPVRMLPANTEVLLSMNEELSTKKNGEGDT FYMTVLHNVVQDGFIVIPKGARATGEVTWKTGKGAFGKSGKMEIEVRYVDVGGNRIPLIGTFRQEGEGNTVATVAAVALV WVAAPFITGKTGRIPAGRELSVRTKEELAFAVPAGAAAAKPALMAVAVEAAPVAAIPVAAPPPVPAAVPTSSPDTTPATE GR
Sequences:
>Translated_242_residues MKSNLLVGAVALALVAHAFGPATAQNAPVVPASADAAPALVAMPVAAPTTNPVRMLPANTEVLLSMNEELSTKKNGEGDT FYMTVLHNVVQDGFIVIPKGARATGEVTWKTGKGAFGKSGKMEIEVRYVDVGGNRIPLIGTFRQEGEGNTVATVAAVALV WVAAPFITGKTGRIPAGRELSVRTKEELAFAVPAGAAAAKPALMAVAVEAAPVAAIPVAAPPPVPAAVPTSSPDTTPATE GR >Mature_242_residues MKSNLLVGAVALALVAHAFGPATAQNAPVVPASADAAPALVAMPVAAPTTNPVRMLPANTEVLLSMNEELSTKKNGEGDT FYMTVLHNVVQDGFIVIPKGARATGEVTWKTGKGAFGKSGKMEIEVRYVDVGGNRIPLIGTFRQEGEGNTVATVAAVALV WVAAPFITGKTGRIPAGRELSVRTKEELAFAVPAGAAAAKPALMAVAVEAAPVAAIPVAAPPPVPAAVPTSSPDTTPATE GR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 24547; Mature: 24547
Theoretical pI: Translated: 8.97; Mature: 8.97
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.9 %Met (Translated Protein) 2.9 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.9 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKSNLLVGAVALALVAHAFGPATAQNAPVVPASADAAPALVAMPVAAPTTNPVRMLPANT CCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCEEEECCCC EVLLSMNEELSTKKNGEGDTFYMTVLHNVVQDGFIVIPKGARATGEVTWKTGKGAFGKSG EEEEEECCHHCCCCCCCCCEEHHHHHHHHHHCCEEEEECCCCCCCEEEEECCCCCCCCCC KMEIEVRYVDVGGNRIPLIGTFRQEGEGNTVATVAAVALVWVAAPFITGKTGRIPAGREL CEEEEEEEEECCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCEE SVRTKEELAFAVPAGAAAAKPALMAVAVEAAPVAAIPVAAPPPVPAAVPTSSPDTTPATE EEEEHHHEEEECCCCCCCCCCEEEEEEECCCCEEEECCCCCCCCCCCCCCCCCCCCCCCC GR CC >Mature Secondary Structure MKSNLLVGAVALALVAHAFGPATAQNAPVVPASADAAPALVAMPVAAPTTNPVRMLPANT CCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCEEEECCCC EVLLSMNEELSTKKNGEGDTFYMTVLHNVVQDGFIVIPKGARATGEVTWKTGKGAFGKSG EEEEEECCHHCCCCCCCCCEEHHHHHHHHHHCCEEEEECCCCCCCEEEEECCCCCCCCCC KMEIEVRYVDVGGNRIPLIGTFRQEGEGNTVATVAAVALVWVAAPFITGKTGRIPAGREL CEEEEEEEEECCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCEE SVRTKEELAFAVPAGAAAAKPALMAVAVEAAPVAAIPVAAPPPVPAAVPTSSPDTTPATE EEEEHHHEEEECCCCCCCCCCEEEEEEECCCCEEEECCCCCCCCCCCCCCCCCCCCCCCC GR CC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA