| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is 103486224
Identifier: 103486224
GI number: 103486224
Start: 737022
End: 737810
Strand: Reverse
Name: 103486224
Synonym: Sala_0731
Alternate gene names: NA
Gene position: 737810-737022 (Counterclockwise)
Preceding gene: 103486225
Following gene: 103486216
Centisome position: 22.06
GC content: 69.96
Gene sequence:
>789_bases ATGATCCGGCGGGTTCGGGCGCATTTGTCGGAGCCCGAACCCCGCCAAAAAAAAAAACGCTTTCCTACATGTTCCTTTTA TGTTCCAAACTGTCCAATGAGCAACACCCTCCCCTCGCCCGCCCCCGAACCCGCCGCCACCCCCGCGCTCGACGCGCACG GGCACGACCCCGCCGCCTATGACTGGGTGCCCGTCCTCAAAAAGCCCCGCAAGGATGGCTGGTCGCCCGCCAGGCAGCGC GCCTTTATCGAGGCGCTGGCCGATTGCGGCTCGGTCGTCACCGCGGCGCAAGCCGTCGGCATGTCCGAAGCCTCGGCCTA TCGCCTGCGCCGCTCACCCGGCGCCGAAGCGTTCGACCGCGCCTGGTCCGCGGCGATCGATGCTGCGGCCAAGAAATTGC TCGACGCCGCGTTCGAACGCGCGCTCGTCGGCACCGACGAGCCGGTGTTCGACCGCGACGGCAACCGCGTCGGCCGCCGC CTGCGCCAGAGCGACCGGCTGCTGATGTTCCTGTTGCGCGCCTATGGCCCCGAACGCTTCGGCGAGCGCGCCGCGACGCC CGCGCCCGCCGTCACCCCCGTTGCCGAGGCGCTAATCCACCTCGAACCCGCACCCCCCGCCGCGCCCGCGGCGCTGATGG CGCCGGACGATCTTGCGATGTCGCTCGACATCGCCGACCAATGCGACGGCCAATTGCCGCCCTGGTATCGTGAGGATCGC GACGATCCGGTCGCGGTGCCCGCCGCGCCGCCCCTCGCGTCGCCGCACGGTGAGGCTGACCTTTGCTGA
Upstream 100 bases:
>100_bases AAGCCGCGCCGGTTGCCGCCATTCCTGTCGCAGCGCCTCCGCCAGTGCCTGCCGCAGTTCCGACGTCGAGCCCAGACACA ACGCCAGCGACCGAGGGCCG
Downstream 100 bases:
>100_bases CTTTTGGCGAACCGGGGCCGCCGCAGGGCTGATATTTAGTGACCTTTGGAGAAAAGGGGGCCGCCGCGGGGCTGACCTTT ACTGACCTTTGACACCCCGG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 262; Mature: 262
Protein sequence:
>262_residues MIRRVRAHLSEPEPRQKKKRFPTCSFYVPNCPMSNTLPSPAPEPAATPALDAHGHDPAAYDWVPVLKKPRKDGWSPARQR AFIEALADCGSVVTAAQAVGMSEASAYRLRRSPGAEAFDRAWSAAIDAAAKKLLDAAFERALVGTDEPVFDRDGNRVGRR LRQSDRLLMFLLRAYGPERFGERAATPAPAVTPVAEALIHLEPAPPAAPAALMAPDDLAMSLDIADQCDGQLPPWYREDR DDPVAVPAAPPLASPHGEADLC
Sequences:
>Translated_262_residues MIRRVRAHLSEPEPRQKKKRFPTCSFYVPNCPMSNTLPSPAPEPAATPALDAHGHDPAAYDWVPVLKKPRKDGWSPARQR AFIEALADCGSVVTAAQAVGMSEASAYRLRRSPGAEAFDRAWSAAIDAAAKKLLDAAFERALVGTDEPVFDRDGNRVGRR LRQSDRLLMFLLRAYGPERFGERAATPAPAVTPVAEALIHLEPAPPAAPAALMAPDDLAMSLDIADQCDGQLPPWYREDR DDPVAVPAAPPLASPHGEADLC >Mature_262_residues MIRRVRAHLSEPEPRQKKKRFPTCSFYVPNCPMSNTLPSPAPEPAATPALDAHGHDPAAYDWVPVLKKPRKDGWSPARQR AFIEALADCGSVVTAAQAVGMSEASAYRLRRSPGAEAFDRAWSAAIDAAAKKLLDAAFERALVGTDEPVFDRDGNRVGRR LRQSDRLLMFLLRAYGPERFGERAATPAPAVTPVAEALIHLEPAPPAAPAALMAPDDLAMSLDIADQCDGQLPPWYREDR DDPVAVPAAPPLASPHGEADLC
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 28341; Mature: 28341
Theoretical pI: Translated: 6.36; Mature: 6.36
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.9 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 4.2 %Cys+Met (Translated Protein) 1.9 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 4.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MIRRVRAHLSEPEPRQKKKRFPTCSFYVPNCPMSNTLPSPAPEPAATPALDAHGHDPAAY CCCHHHHHCCCCCHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCH DWVPVLKKPRKDGWSPARQRAFIEALADCGSVVTAAQAVGMSEASAYRLRRSPGAEAFDR HHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHH AWSAAIDAAAKKLLDAAFERALVGTDEPVFDRDGNRVGRRLRQSDRLLMFLLRAYGPERF HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCHHHH GERAATPAPAVTPVAEALIHLEPAPPAAPAALMAPDDLAMSLDIADQCDGQLPPWYREDR HHHCCCCCCCHHHHHHHHHHCCCCCCCCCEEEECCCCCEEECCCHHHCCCCCCCCCCCCC DDPVAVPAAPPLASPHGEADLC CCCEECCCCCCCCCCCCCCCCC >Mature Secondary Structure MIRRVRAHLSEPEPRQKKKRFPTCSFYVPNCPMSNTLPSPAPEPAATPALDAHGHDPAAY CCCHHHHHCCCCCHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCH DWVPVLKKPRKDGWSPARQRAFIEALADCGSVVTAAQAVGMSEASAYRLRRSPGAEAFDR HHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHH AWSAAIDAAAKKLLDAAFERALVGTDEPVFDRDGNRVGRRLRQSDRLLMFLLRAYGPERF HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCHHHH GERAATPAPAVTPVAEALIHLEPAPPAAPAALMAPDDLAMSLDIADQCDGQLPPWYREDR HHHCCCCCCCHHHHHHHHHHCCCCCCCCCEEEECCCCCEEECCCHHHCCCCCCCCCCCCC DDPVAVPAAPPLASPHGEADLC CCCEECCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA