Definition Sphingopyxis alaskensis RB2256, complete genome.
Accession NC_008048
Length 3,345,170

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The map label for this gene is 103486216

Identifier: 103486216

GI number: 103486216

Start: 729706

End: 731151

Strand: Reverse

Name: 103486216

Synonym: Sala_0723

Alternate gene names: NA

Gene position: 731151-729706 (Counterclockwise)

Preceding gene: 103486224

Following gene: 103486215

Centisome position: 21.86

GC content: 67.63

Gene sequence:

>1446_bases
TTGCCTTTTACGTTCCGTTTTGGGACAGATGTGGCAATTCTGGTTGATTTCGCCCTCCCTTTCCCACTGTCGGACAGGCA
AACGCGGTTAACGCGATTGCCGCGTTCACAAAGCTTTGGCCTTTCTGCTTCTAGCGAAAGCCGATCGGGGGTGCCGGATC
GCTGGCGCTTCGCACCTGTAACGGGAAAGAGAGAAGAACCTATGTCTGTCCGGATGGCCCTCGCCAAGCTTTGTGCCTGC
ACCTGCGGCGGCGCGATTATCGGCAGCGGCGCGATGCAGGTCGCCGATGTTCCCTCGGCGCGCGCGCAGACGGTCAAATG
TTCGCCATGCACCGGCAAGAAGGTGGTGCGCAAGCGTCACGCCGCACGCAAGCCGGTAAAGCGCGTGCGCCGCGTCGTGA
CGACAAAAAGGGTGATCCGCACCGAAACCCCGCAGCAGCAGGTCGTCACGCAGACGATCCCGCTGCCTCCAATCCCCTAT
GCCCCGTTCCCGCAGGCGAGCTGGGAAGGCGGCGGCAGCGGCGGCGGCGTCACGGTGATCGGCGGCGGATTCGGCGGCGG
ATTCGGTGGTGGGTTTTTCGGCGGATTCTTCGGCGGCAGTTCGGGCGGCAGCAGCGGCAGCATCGTCGTCACCTCGACGA
CGACAGGCGGGCTCAGCACGACGAGCAGCAGCACCTCTGGCGGCGTGTCGACCTCGACGGGCGGCGTCAGCACATCGACG
TCGACGGGTGGCGTTTCGACCTCGACGGGCGGTGTAAGCACCTCGACATCGACCGGCGGCGTCTCGACCTCGACCGGCGG
CGTCAGCACATCCACCGGGGGCGTCAGCACCTCAACCGGCGGCGTCTCGACGTCAACCGGCGGAGTCTCGACCTCAACCG
GCGGCGTGTCGACCTCGACGGGCGGCGTGTCGACCTCGACCGGGGGCGTCAGCACCTCATCGTCGAGCAGCAGCTCGTCG
TCGAGTTCATCGTCCTCTTCCTCTTCGAGTTCCTCCTCCTCGTCGGGCGGTAGCTCGTCAAAGGGCAGCTCAAGCTGGGG
CGGATCGTCGTCGCACGGCAGTTCGGGCGGCTCGAACGGGTCGAGCGGCAGCTCGTCGGGCGGATCGGGCAGCTCCTCGT
CGAGCAGCAGTTCCTCATCTTCCTCCTCGTCGAGCAGCAGCACGTCGAGCGGCGCGACCTCGTCAGGTGCCACGGGCGGC
AGCAGCAGCTGGGGTTCGACCGGCAGCACCGGCTCCTCCTCGTCGAGCAGCAGCAGCTCGTCGTCCAGCTCCTCCTCGTC
GTCGAGCTCGGGCGGCAGCACCAGCAGTTCGTCGGGCGACCCCACGCCGGTTCCGGCGCCACCGATGCTGCTGTTGTTCG
GCGCCGCGGCCGCGGCGCTCGTCGCGCGCCGCCGCGCGGCGAATCGCAACGACGCCGCGGCCGACGACAACGCCGACGCG
GCCTGA

Upstream 100 bases:

>100_bases
CGCGATGAACCGGCGGCGATTCTCGCGCCACGTCGCGCCGCCCCGTACCGTCGCGGCGACCGTGATTTAGGTCCGAAGAT
TAACCAATCGCATAGAATCA

Downstream 100 bases:

>100_bases
TCCGAATCCACTGGCGGTCAGGGGGCAAACCCGGACCACCGAACTGAGGGCCGCTCTTCGGGGCGGCCCTTTTTTACGCC
CGCGACGCCGGTGCAACGGG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 481; Mature: 480

Protein sequence:

>481_residues
MPFTFRFGTDVAILVDFALPFPLSDRQTRLTRLPRSQSFGLSASSESRSGVPDRWRFAPVTGKREEPMSVRMALAKLCAC
TCGGAIIGSGAMQVADVPSARAQTVKCSPCTGKKVVRKRHAARKPVKRVRRVVTTKRVIRTETPQQQVVTQTIPLPPIPY
APFPQASWEGGGSGGGVTVIGGGFGGGFGGGFFGGFFGGSSGGSSGSIVVTSTTTGGLSTTSSSTSGGVSTSTGGVSTST
STGGVSTSTGGVSTSTSTGGVSTSTGGVSTSTGGVSTSTGGVSTSTGGVSTSTGGVSTSTGGVSTSTGGVSTSSSSSSSS
SSSSSSSSSSSSSSSGGSSSKGSSSWGGSSSHGSSGGSNGSSGSSSGGSGSSSSSSSSSSSSSSSSSTSSGATSSGATGG
SSSWGSTGSTGSSSSSSSSSSSSSSSSSSSGGSTSSSSGDPTPVPAPPMLLLFGAAAAALVARRRAANRNDAAADDNADA
A

Sequences:

>Translated_481_residues
MPFTFRFGTDVAILVDFALPFPLSDRQTRLTRLPRSQSFGLSASSESRSGVPDRWRFAPVTGKREEPMSVRMALAKLCAC
TCGGAIIGSGAMQVADVPSARAQTVKCSPCTGKKVVRKRHAARKPVKRVRRVVTTKRVIRTETPQQQVVTQTIPLPPIPY
APFPQASWEGGGSGGGVTVIGGGFGGGFGGGFFGGFFGGSSGGSSGSIVVTSTTTGGLSTTSSSTSGGVSTSTGGVSTST
STGGVSTSTGGVSTSTSTGGVSTSTGGVSTSTGGVSTSTGGVSTSTGGVSTSTGGVSTSTGGVSTSTGGVSTSSSSSSSS
SSSSSSSSSSSSSSSGGSSSKGSSSWGGSSSHGSSGGSNGSSGSSSGGSGSSSSSSSSSSSSSSSSSTSSGATSSGATGG
SSSWGSTGSTGSSSSSSSSSSSSSSSSSSSGGSTSSSSGDPTPVPAPPMLLLFGAAAAALVARRRAANRNDAAADDNADA
A
>Mature_480_residues
PFTFRFGTDVAILVDFALPFPLSDRQTRLTRLPRSQSFGLSASSESRSGVPDRWRFAPVTGKREEPMSVRMALAKLCACT
CGGAIIGSGAMQVADVPSARAQTVKCSPCTGKKVVRKRHAARKPVKRVRRVVTTKRVIRTETPQQQVVTQTIPLPPIPYA
PFPQASWEGGGSGGGVTVIGGGFGGGFGGGFFGGFFGGSSGGSSGSIVVTSTTTGGLSTTSSSTSGGVSTSTGGVSTSTS
TGGVSTSTGGVSTSTSTGGVSTSTGGVSTSTGGVSTSTGGVSTSTGGVSTSTGGVSTSTGGVSTSTGGVSTSSSSSSSSS
SSSSSSSSSSSSSSGGSSSKGSSSWGGSSSHGSSGGSNGSSGSSSGGSGSSSSSSSSSSSSSSSSSTSSGATSSGATGGS
SSWGSTGSTGSSSSSSSSSSSSSSSSSSSGGSTSSSSGDPTPVPAPPMLLLFGAAAAALVARRRAANRNDAAADDNADAA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 45660; Mature: 45529

Theoretical pI: Translated: 11.58; Mature: 11.58

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPFTFRFGTDVAILVDFALPFPLSDRQTRLTRLPRSQSFGLSASSESRSGVPDRWRFAPV
CCEEEECCCCEEEEEEECCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEECCC
TGKREEPMSVRMALAKLCACTCGGAIIGSGAMQVADVPSARAQTVKCSPCTGKKVVRKRH
CCCCCCCHHHHHHHHHHHHHHCCCCEECCCCEEEECCCCCCCCEEEECCCCCHHHHHHHH
AARKPVKRVRRVVTTKRVIRTETPQQQVVTQTIPLPPIPYAPFPQASWEGGGSGGGVTVI
HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEEE
GGGFGGGFGGGFFGGFFGGSSGGSSGSIVVTSTTTGGLSTTSSSTSGGVSTSTGGVSTST
ECCCCCCCCHHHHHHHCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCC
STGGVSTSTGGVSTSTSTGGVSTSTGGVSTSTGGVSTSTGGVSTSTGGVSTSTGGVSTST
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
GGVSTSTGGVSTSSSSSSSSSSSSSSSSSSSSSSSGGSSSKGSSSWGGSSSHGSSGGSNG
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
SSGSSSGGSGSSSSSSSSSSSSSSSSSTSSGATSSGATGGSSSWGSTGSTGSSSSSSSSS
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
SSSSSSSSSSGGSTSSSSGDPTPVPAPPMLLLFGAAAAALVARRRAANRNDAAADDNADA
CCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
A
C
>Mature Secondary Structure 
PFTFRFGTDVAILVDFALPFPLSDRQTRLTRLPRSQSFGLSASSESRSGVPDRWRFAPV
CEEEECCCCEEEEEEECCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEECCC
TGKREEPMSVRMALAKLCACTCGGAIIGSGAMQVADVPSARAQTVKCSPCTGKKVVRKRH
CCCCCCCHHHHHHHHHHHHHHCCCCEECCCCEEEECCCCCCCCEEEECCCCCHHHHHHHH
AARKPVKRVRRVVTTKRVIRTETPQQQVVTQTIPLPPIPYAPFPQASWEGGGSGGGVTVI
HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEEE
GGGFGGGFGGGFFGGFFGGSSGGSSGSIVVTSTTTGGLSTTSSSTSGGVSTSTGGVSTST
ECCCCCCCCHHHHHHHCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCC
STGGVSTSTGGVSTSTSTGGVSTSTGGVSTSTGGVSTSTGGVSTSTGGVSTSTGGVSTST
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
GGVSTSTGGVSTSSSSSSSSSSSSSSSSSSSSSSSGGSSSKGSSSWGGSSSHGSSGGSNG
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
SSGSSSGGSGSSSSSSSSSSSSSSSSSTSSGATSSGATGGSSSWGSTGSTGSSSSSSSSS
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
SSSSSSSSSSGGSTSSSSGDPTPVPAPPMLLLFGAAAAALVARRRAANRNDAAADDNADA
CCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
A
C

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA