| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is 103486216
Identifier: 103486216
GI number: 103486216
Start: 729706
End: 731151
Strand: Reverse
Name: 103486216
Synonym: Sala_0723
Alternate gene names: NA
Gene position: 731151-729706 (Counterclockwise)
Preceding gene: 103486224
Following gene: 103486215
Centisome position: 21.86
GC content: 67.63
Gene sequence:
>1446_bases TTGCCTTTTACGTTCCGTTTTGGGACAGATGTGGCAATTCTGGTTGATTTCGCCCTCCCTTTCCCACTGTCGGACAGGCA AACGCGGTTAACGCGATTGCCGCGTTCACAAAGCTTTGGCCTTTCTGCTTCTAGCGAAAGCCGATCGGGGGTGCCGGATC GCTGGCGCTTCGCACCTGTAACGGGAAAGAGAGAAGAACCTATGTCTGTCCGGATGGCCCTCGCCAAGCTTTGTGCCTGC ACCTGCGGCGGCGCGATTATCGGCAGCGGCGCGATGCAGGTCGCCGATGTTCCCTCGGCGCGCGCGCAGACGGTCAAATG TTCGCCATGCACCGGCAAGAAGGTGGTGCGCAAGCGTCACGCCGCACGCAAGCCGGTAAAGCGCGTGCGCCGCGTCGTGA CGACAAAAAGGGTGATCCGCACCGAAACCCCGCAGCAGCAGGTCGTCACGCAGACGATCCCGCTGCCTCCAATCCCCTAT GCCCCGTTCCCGCAGGCGAGCTGGGAAGGCGGCGGCAGCGGCGGCGGCGTCACGGTGATCGGCGGCGGATTCGGCGGCGG ATTCGGTGGTGGGTTTTTCGGCGGATTCTTCGGCGGCAGTTCGGGCGGCAGCAGCGGCAGCATCGTCGTCACCTCGACGA CGACAGGCGGGCTCAGCACGACGAGCAGCAGCACCTCTGGCGGCGTGTCGACCTCGACGGGCGGCGTCAGCACATCGACG TCGACGGGTGGCGTTTCGACCTCGACGGGCGGTGTAAGCACCTCGACATCGACCGGCGGCGTCTCGACCTCGACCGGCGG CGTCAGCACATCCACCGGGGGCGTCAGCACCTCAACCGGCGGCGTCTCGACGTCAACCGGCGGAGTCTCGACCTCAACCG GCGGCGTGTCGACCTCGACGGGCGGCGTGTCGACCTCGACCGGGGGCGTCAGCACCTCATCGTCGAGCAGCAGCTCGTCG TCGAGTTCATCGTCCTCTTCCTCTTCGAGTTCCTCCTCCTCGTCGGGCGGTAGCTCGTCAAAGGGCAGCTCAAGCTGGGG CGGATCGTCGTCGCACGGCAGTTCGGGCGGCTCGAACGGGTCGAGCGGCAGCTCGTCGGGCGGATCGGGCAGCTCCTCGT CGAGCAGCAGTTCCTCATCTTCCTCCTCGTCGAGCAGCAGCACGTCGAGCGGCGCGACCTCGTCAGGTGCCACGGGCGGC AGCAGCAGCTGGGGTTCGACCGGCAGCACCGGCTCCTCCTCGTCGAGCAGCAGCAGCTCGTCGTCCAGCTCCTCCTCGTC GTCGAGCTCGGGCGGCAGCACCAGCAGTTCGTCGGGCGACCCCACGCCGGTTCCGGCGCCACCGATGCTGCTGTTGTTCG GCGCCGCGGCCGCGGCGCTCGTCGCGCGCCGCCGCGCGGCGAATCGCAACGACGCCGCGGCCGACGACAACGCCGACGCG GCCTGA
Upstream 100 bases:
>100_bases CGCGATGAACCGGCGGCGATTCTCGCGCCACGTCGCGCCGCCCCGTACCGTCGCGGCGACCGTGATTTAGGTCCGAAGAT TAACCAATCGCATAGAATCA
Downstream 100 bases:
>100_bases TCCGAATCCACTGGCGGTCAGGGGGCAAACCCGGACCACCGAACTGAGGGCCGCTCTTCGGGGCGGCCCTTTTTTACGCC CGCGACGCCGGTGCAACGGG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 481; Mature: 480
Protein sequence:
>481_residues MPFTFRFGTDVAILVDFALPFPLSDRQTRLTRLPRSQSFGLSASSESRSGVPDRWRFAPVTGKREEPMSVRMALAKLCAC TCGGAIIGSGAMQVADVPSARAQTVKCSPCTGKKVVRKRHAARKPVKRVRRVVTTKRVIRTETPQQQVVTQTIPLPPIPY APFPQASWEGGGSGGGVTVIGGGFGGGFGGGFFGGFFGGSSGGSSGSIVVTSTTTGGLSTTSSSTSGGVSTSTGGVSTST STGGVSTSTGGVSTSTSTGGVSTSTGGVSTSTGGVSTSTGGVSTSTGGVSTSTGGVSTSTGGVSTSTGGVSTSSSSSSSS SSSSSSSSSSSSSSSGGSSSKGSSSWGGSSSHGSSGGSNGSSGSSSGGSGSSSSSSSSSSSSSSSSSTSSGATSSGATGG SSSWGSTGSTGSSSSSSSSSSSSSSSSSSSGGSTSSSSGDPTPVPAPPMLLLFGAAAAALVARRRAANRNDAAADDNADA A
Sequences:
>Translated_481_residues MPFTFRFGTDVAILVDFALPFPLSDRQTRLTRLPRSQSFGLSASSESRSGVPDRWRFAPVTGKREEPMSVRMALAKLCAC TCGGAIIGSGAMQVADVPSARAQTVKCSPCTGKKVVRKRHAARKPVKRVRRVVTTKRVIRTETPQQQVVTQTIPLPPIPY APFPQASWEGGGSGGGVTVIGGGFGGGFGGGFFGGFFGGSSGGSSGSIVVTSTTTGGLSTTSSSTSGGVSTSTGGVSTST STGGVSTSTGGVSTSTSTGGVSTSTGGVSTSTGGVSTSTGGVSTSTGGVSTSTGGVSTSTGGVSTSTGGVSTSSSSSSSS SSSSSSSSSSSSSSSGGSSSKGSSSWGGSSSHGSSGGSNGSSGSSSGGSGSSSSSSSSSSSSSSSSSTSSGATSSGATGG SSSWGSTGSTGSSSSSSSSSSSSSSSSSSSGGSTSSSSGDPTPVPAPPMLLLFGAAAAALVARRRAANRNDAAADDNADA A >Mature_480_residues PFTFRFGTDVAILVDFALPFPLSDRQTRLTRLPRSQSFGLSASSESRSGVPDRWRFAPVTGKREEPMSVRMALAKLCACT CGGAIIGSGAMQVADVPSARAQTVKCSPCTGKKVVRKRHAARKPVKRVRRVVTTKRVIRTETPQQQVVTQTIPLPPIPYA PFPQASWEGGGSGGGVTVIGGGFGGGFGGGFFGGFFGGSSGGSSGSIVVTSTTTGGLSTTSSSTSGGVSTSTGGVSTSTS TGGVSTSTGGVSTSTSTGGVSTSTGGVSTSTGGVSTSTGGVSTSTGGVSTSTGGVSTSTGGVSTSTGGVSTSSSSSSSSS SSSSSSSSSSSSSSGGSSSKGSSSWGGSSSHGSSGGSNGSSGSSSGGSGSSSSSSSSSSSSSSSSSTSSGATSSGATGGS SSWGSTGSTGSSSSSSSSSSSSSSSSSSSGGSTSSSSGDPTPVPAPPMLLLFGAAAAALVARRRAANRNDAAADDNADAA
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 45660; Mature: 45529
Theoretical pI: Translated: 11.58; Mature: 11.58
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 1.0 %Met (Translated Protein) 2.1 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 0.8 %Met (Mature Protein) 1.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPFTFRFGTDVAILVDFALPFPLSDRQTRLTRLPRSQSFGLSASSESRSGVPDRWRFAPV CCEEEECCCCEEEEEEECCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEECCC TGKREEPMSVRMALAKLCACTCGGAIIGSGAMQVADVPSARAQTVKCSPCTGKKVVRKRH CCCCCCCHHHHHHHHHHHHHHCCCCEECCCCEEEECCCCCCCCEEEECCCCCHHHHHHHH AARKPVKRVRRVVTTKRVIRTETPQQQVVTQTIPLPPIPYAPFPQASWEGGGSGGGVTVI HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEEE GGGFGGGFGGGFFGGFFGGSSGGSSGSIVVTSTTTGGLSTTSSSTSGGVSTSTGGVSTST ECCCCCCCCHHHHHHHCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCC STGGVSTSTGGVSTSTSTGGVSTSTGGVSTSTGGVSTSTGGVSTSTGGVSTSTGGVSTST CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC GGVSTSTGGVSTSSSSSSSSSSSSSSSSSSSSSSSGGSSSKGSSSWGGSSSHGSSGGSNG CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC SSGSSSGGSGSSSSSSSSSSSSSSSSSTSSGATSSGATGGSSSWGSTGSTGSSSSSSSSS CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC SSSSSSSSSSGGSTSSSSGDPTPVPAPPMLLLFGAAAAALVARRRAANRNDAAADDNADA CCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC A C >Mature Secondary Structure PFTFRFGTDVAILVDFALPFPLSDRQTRLTRLPRSQSFGLSASSESRSGVPDRWRFAPV CEEEECCCCEEEEEEECCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEECCC TGKREEPMSVRMALAKLCACTCGGAIIGSGAMQVADVPSARAQTVKCSPCTGKKVVRKRH CCCCCCCHHHHHHHHHHHHHHCCCCEECCCCEEEECCCCCCCCEEEECCCCCHHHHHHHH AARKPVKRVRRVVTTKRVIRTETPQQQVVTQTIPLPPIPYAPFPQASWEGGGSGGGVTVI HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEEE GGGFGGGFGGGFFGGFFGGSSGGSSGSIVVTSTTTGGLSTTSSSTSGGVSTSTGGVSTST ECCCCCCCCHHHHHHHCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCC STGGVSTSTGGVSTSTSTGGVSTSTGGVSTSTGGVSTSTGGVSTSTGGVSTSTGGVSTST CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC GGVSTSTGGVSTSSSSSSSSSSSSSSSSSSSSSSSGGSSSKGSSSWGGSSSHGSSGGSNG CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC SSGSSSGGSGSSSSSSSSSSSSSSSSSTSSGATSSGATGGSSSWGSTGSTGSSSSSSSSS CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC SSSSSSSSSSGGSTSSSSGDPTPVPAPPMLLLFGAAAAALVARRRAANRNDAAADDNADA CCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC A C
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA