| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is 103486209
Identifier: 103486209
GI number: 103486209
Start: 722321
End: 722965
Strand: Direct
Name: 103486209
Synonym: Sala_0716
Alternate gene names: NA
Gene position: 722321-722965 (Clockwise)
Preceding gene: 103486207
Following gene: 103486210
Centisome position: 21.59
GC content: 64.19
Gene sequence:
>645_bases ATGTTCGCTTGGTTCCAGCGGCTGCTGCCGCGGCAGGGCAATTTTTTCGAATTGTTCGAAAGCCACGCAGCCACGCTGGT GGCGGGCGCCAATGCACTGTCGCGCATGTTGCAGGGCGGTGAGGGCATGGCCGATCATGTGCGCGAGATCATCGAGCGCG AGCATGACGCCGACGCGATCACGCGCGAGGTGCTCCAGACGGTCCGCCGCACCTTCCTGACGCCTTTCGACCGCGGCGCG ATCACCGACCTTATCGCTTCGATGGACGATGCGATCGACGAGATGCAGAAGACTGCGGGCGCGGTCGACCTGTATGATGT CACCGAGTTCGAGCCCGAGATGCGCGACATTGCGGGCATCATCGTCGATGCGGCGCGCCTGACCGCAGAAGCGCTGCCGT TGCTCCGCAACATCGGCGCCAACGGCCCGCGTCTTCACGAGCTGACCGAGCGGCTGGTGCGAATGGAGGGCCATGCCGAC GAAATCCATGCCTCGGGCCTCAAGCGGCTGTTCCGCGAGCATGGCGAGACGAACCCGACGCGCTTTCTGATCGCGCGCGA ACTGTTTCGCCACCTCGAGCGCGTCACCGACAGTTTCGAGGATGTCGCGAACGAAATCGACGGCCTGGTCATCGACCACG CCTAG
Upstream 100 bases:
>100_bases GCAGGCGCTGATCCGCTCCTTTGGCGATGGCGGCTTTCGCGCCGTGGCGCAGCCGCGCGGGGCGGTCCCGAACAGTGACG ACAAGACAGGGGTAAGCCGG
Downstream 100 bases:
>100_bases GCGGACAATTGCAGATGTACGCCCACCAATCCGTTCGCATCGAGCCCTTCGGCTGCCTTGCAGGCGCTCAGGATAAACTT CCGGCTGAAGCCGGAAGTCG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 214; Mature: 214
Protein sequence:
>214_residues MFAWFQRLLPRQGNFFELFESHAATLVAGANALSRMLQGGEGMADHVREIIEREHDADAITREVLQTVRRTFLTPFDRGA ITDLIASMDDAIDEMQKTAGAVDLYDVTEFEPEMRDIAGIIVDAARLTAEALPLLRNIGANGPRLHELTERLVRMEGHAD EIHASGLKRLFREHGETNPTRFLIARELFRHLERVTDSFEDVANEIDGLVIDHA
Sequences:
>Translated_214_residues MFAWFQRLLPRQGNFFELFESHAATLVAGANALSRMLQGGEGMADHVREIIEREHDADAITREVLQTVRRTFLTPFDRGA ITDLIASMDDAIDEMQKTAGAVDLYDVTEFEPEMRDIAGIIVDAARLTAEALPLLRNIGANGPRLHELTERLVRMEGHAD EIHASGLKRLFREHGETNPTRFLIARELFRHLERVTDSFEDVANEIDGLVIDHA >Mature_214_residues MFAWFQRLLPRQGNFFELFESHAATLVAGANALSRMLQGGEGMADHVREIIEREHDADAITREVLQTVRRTFLTPFDRGA ITDLIASMDDAIDEMQKTAGAVDLYDVTEFEPEMRDIAGIIVDAARLTAEALPLLRNIGANGPRLHELTERLVRMEGHAD EIHASGLKRLFREHGETNPTRFLIARELFRHLERVTDSFEDVANEIDGLVIDHA
Specific function: Could be involved in orthophosphate transport [H]
COG id: COG1392
COG function: function code P; Phosphate transport regulator (distant homolog of PhoU)
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the UPF0111 family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR018445 [H]
Pfam domain/function: PF01865 PhoU_div [H]
EC number: NA
Molecular weight: Translated: 24131; Mature: 24131
Theoretical pI: Translated: 4.68; Mature: 4.68
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 3.3 %Met (Translated Protein) 3.3 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 3.3 %Met (Mature Protein) 3.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MFAWFQRLLPRQGNFFELFESHAATLVAGANALSRMLQGGEGMADHVREIIEREHDADAI CHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHH TREVLQTVRRTFLTPFDRGAITDLIASMDDAIDEMQKTAGAVDLYDVTEFEPEMRDIAGI HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCHHHHHHHHH IVDAARLTAEALPLLRNIGANGPRLHELTERLVRMEGHADEIHASGLKRLFREHGETNPT HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCHH RFLIARELFRHLERVTDSFEDVANEIDGLVIDHA HHHHHHHHHHHHHHHHHHHHHHHHHHCCEECCCC >Mature Secondary Structure MFAWFQRLLPRQGNFFELFESHAATLVAGANALSRMLQGGEGMADHVREIIEREHDADAI CHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHH TREVLQTVRRTFLTPFDRGAITDLIASMDDAIDEMQKTAGAVDLYDVTEFEPEMRDIAGI HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCHHHHHHHHH IVDAARLTAEALPLLRNIGANGPRLHELTERLVRMEGHADEIHASGLKRLFREHGETNPT HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCHH RFLIARELFRHLERVTDSFEDVANEIDGLVIDHA HHHHHHHHHHHHHHHHHHHHHHHHHHCCEECCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9696772; 11481430 [H]