| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is 103486207
Identifier: 103486207
GI number: 103486207
Start: 719077
End: 719916
Strand: Direct
Name: 103486207
Synonym: Sala_0714
Alternate gene names: NA
Gene position: 719077-719916 (Clockwise)
Preceding gene: 103486203
Following gene: 103486209
Centisome position: 21.5
GC content: 66.31
Gene sequence:
>840_bases ATGACGAACAAAAGACCCTGGCGAAACGCCGTTTCGTTGCTTGCCGGTGCGCTGTTGCTGGCGGGCTGTTCCGAAGACCG GCCGACACAGGTGGAAAAGATGGTGGCCGCCGCCGTCCCCGGCGCGCCGCCCACCGCCGCCGCCGACGAAGCGGCCAAAA ATGCTTCGGCATCGAAGGTCAGCGAAAGCAGCGACTTGATCGAGTTCACCTATAGCTATCCCGCCGACGCCGCGCGGATT CCCGAACTCGCCGAGGCATTGGACAGCGATCGCGCCGCGAAGCGCGCGGCGCTCATCGCAGCGGCGGAGCGCGCCAAGGC CGCGGCCGAAAAGAACGACCATCCCTATCGCCCGCACAGCCATCGCCAGACCTGGCAGCGCGTCACCAACACGCCGCGCT TTCTCAGCCTGTCGGCGGAGATCGATACCTATACGGGTGGCGCACACGGGATGGAGGTGTTCGACACGCTGCTGTGGGAC CGGGGCCGCCGCAAGCGGATGAAACCGCTCGACCTGTTCGAGAGCAGCGCCGCCTTCGACGCCGCAGTCCGTGAGGCCTT CTGCGCGGGGATCAAGCGTGCGAAAGCCGCGAAGGGCATCGCGGCGGCGGAGGCGCCCGACAGCCCCTTTGCCAAATGCC CGCCGGCGTCGGCGCAGACGGTGTGGATCGGCTCGTCCGACGGGCGCTATCTCGACCGCCTGACGATCGCGATCGCTCCT TATGAAGTCGGCCCCTATGCCGAGGGCAGCTATCGGATCAACGTGCCGATCACCGGCGCGGTCGCGAAGGTCGTGAAGGA CGAGTTTGCGCGCAATATCATGCCGATAAACCAACCCTAG
Upstream 100 bases:
>100_bases ATCCTGCCCCTTATCGGGCTGGATCAAGTCGGAATAGTCGATCATGCCCGCCGTGCTAGGCCGATCGGGATATTTTGTCG ATTCCCGGCGTTATGCCTGC
Downstream 100 bases:
>100_bases CGAACCAACACGACACAGGAAGGGAGACACATTATGCCCGCCAGATCGAAAGCCCAGCAGAAAGCGGCGGGTGCCGCACT CAGCGCCAGGCGTGGTGAGA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 279; Mature: 278
Protein sequence:
>279_residues MTNKRPWRNAVSLLAGALLLAGCSEDRPTQVEKMVAAAVPGAPPTAAADEAAKNASASKVSESSDLIEFTYSYPADAARI PELAEALDSDRAAKRAALIAAAERAKAAAEKNDHPYRPHSHRQTWQRVTNTPRFLSLSAEIDTYTGGAHGMEVFDTLLWD RGRRKRMKPLDLFESSAAFDAAVREAFCAGIKRAKAAKGIAAAEAPDSPFAKCPPASAQTVWIGSSDGRYLDRLTIAIAP YEVGPYAEGSYRINVPITGAVAKVVKDEFARNIMPINQP
Sequences:
>Translated_279_residues MTNKRPWRNAVSLLAGALLLAGCSEDRPTQVEKMVAAAVPGAPPTAAADEAAKNASASKVSESSDLIEFTYSYPADAARI PELAEALDSDRAAKRAALIAAAERAKAAAEKNDHPYRPHSHRQTWQRVTNTPRFLSLSAEIDTYTGGAHGMEVFDTLLWD RGRRKRMKPLDLFESSAAFDAAVREAFCAGIKRAKAAKGIAAAEAPDSPFAKCPPASAQTVWIGSSDGRYLDRLTIAIAP YEVGPYAEGSYRINVPITGAVAKVVKDEFARNIMPINQP >Mature_278_residues TNKRPWRNAVSLLAGALLLAGCSEDRPTQVEKMVAAAVPGAPPTAAADEAAKNASASKVSESSDLIEFTYSYPADAARIP ELAEALDSDRAAKRAALIAAAERAKAAAEKNDHPYRPHSHRQTWQRVTNTPRFLSLSAEIDTYTGGAHGMEVFDTLLWDR GRRKRMKPLDLFESSAAFDAAVREAFCAGIKRAKAAKGIAAAEAPDSPFAKCPPASAQTVWIGSSDGRYLDRLTIAIAPY EVGPYAEGSYRINVPITGAVAKVVKDEFARNIMPINQP
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 29954; Mature: 29823
Theoretical pI: Translated: 8.76; Mature: 8.76
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 2.9 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 2.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTNKRPWRNAVSLLAGALLLAGCSEDRPTQVEKMVAAAVPGAPPTAAADEAAKNASASKV CCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHCCCHHHH SESSDLIEFTYSYPADAARIPELAEALDSDRAAKRAALIAAAERAKAAAEKNDHPYRPHS CCCCCEEEEEECCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCH HRQTWQRVTNTPRFLSLSAEIDTYTGGAHGMEVFDTLLWDRGRRKRMKPLDLFESSAAFD HHHHHHHHHCCCCEEEEECCCCCCCCCCCHHHHHHHHHHCCCCHHCCCHHHHHHHHHHHH AAVREAFCAGIKRAKAAKGIAAAEAPDSPFAKCPPASAQTVWIGSSDGRYLDRLTIAIAP HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCEEEEEEEEEEC YEVGPYAEGSYRINVPITGAVAKVVKDEFARNIMPINQP CCCCCCCCCCEEEECCCHHHHHHHHHHHHHHHCCCCCCC >Mature Secondary Structure TNKRPWRNAVSLLAGALLLAGCSEDRPTQVEKMVAAAVPGAPPTAAADEAAKNASASKV CCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHCCCHHHH SESSDLIEFTYSYPADAARIPELAEALDSDRAAKRAALIAAAERAKAAAEKNDHPYRPHS CCCCCEEEEEECCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCH HRQTWQRVTNTPRFLSLSAEIDTYTGGAHGMEVFDTLLWDRGRRKRMKPLDLFESSAAFD HHHHHHHHHCCCCEEEEECCCCCCCCCCCHHHHHHHHHHCCCCHHCCCHHHHHHHHHHHH AAVREAFCAGIKRAKAAKGIAAAEAPDSPFAKCPPASAQTVWIGSSDGRYLDRLTIAIAP HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCEEEEEEEEEEC YEVGPYAEGSYRINVPITGAVAKVVKDEFARNIMPINQP CCCCCCCCCCEEEECCCHHHHHHHHHHHHHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA