| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is 103486133
Identifier: 103486133
GI number: 103486133
Start: 653681
End: 654184
Strand: Reverse
Name: 103486133
Synonym: Sala_0640
Alternate gene names: NA
Gene position: 654184-653681 (Counterclockwise)
Preceding gene: 103486134
Following gene: 103486132
Centisome position: 19.56
GC content: 56.94
Gene sequence:
>504_bases ATGGCAAGCGATGGTGATTGGTTCTGGCCGCTAGCTGGCGCGGCAGTTCTCGCATGGCTCGCCTATGATAAGTGGTGGAA AGAGGAAGAGCCGCCGTCGCCACCGCCCCCCATCTTCGCTCCTGTTTCGATCAGGCCTTCAGGCCTCGTTTACGTAACCG AACTGGATAGTGGCGCTGTTTGGCGCGTGAACGCGGATAGCGTGAAAGGCGTACGATCAGACCGGACATTTTGGATCGAT CAGGACCATTCCAAGAATAAATCCGAAAGAGCCCGTTCAATAATGACGCTTTACAGGGTAGATTGCGACAGCACCGCAAC AGCCCGCCTAAGCCTCGTTGCTTATGACGGGGATGGCAACGTCCTGATTAAGCAAGACTCCCCCCACGCCGAGGAGACAT TCACGCCTCCCGGCTCTGTTTTGGGCAGCGTATTCGACGAAGTCTGCAAGTCGGTTTATGATCCGCCTCCGGTAGCGCCG CCTCCCCCTAGCCCTTCTCGTTAG
Upstream 100 bases:
>100_bases CCGCCGTGGTCGGGGTCGAACGGTATATCCATTATTCTAAGCATTGGACGGACGAACCGGGTACGGGCGACGAGGCTGAG ATTTTTCGCTAGGAGGGGGT
Downstream 100 bases:
>100_bases AGTATCTGTAATGGAATTACGGTGACAGCTTGCTCAACCCCCAAACTCGCCCCCACCGCGGAAAATATCCTGTCCTACAC AATCGCCCCGCGTTAGCTTC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 167; Mature: 166
Protein sequence:
>167_residues MASDGDWFWPLAGAAVLAWLAYDKWWKEEEPPSPPPPIFAPVSIRPSGLVYVTELDSGAVWRVNADSVKGVRSDRTFWID QDHSKNKSERARSIMTLYRVDCDSTATARLSLVAYDGDGNVLIKQDSPHAEETFTPPGSVLGSVFDEVCKSVYDPPPVAP PPPSPSR
Sequences:
>Translated_167_residues MASDGDWFWPLAGAAVLAWLAYDKWWKEEEPPSPPPPIFAPVSIRPSGLVYVTELDSGAVWRVNADSVKGVRSDRTFWID QDHSKNKSERARSIMTLYRVDCDSTATARLSLVAYDGDGNVLIKQDSPHAEETFTPPGSVLGSVFDEVCKSVYDPPPVAP PPPSPSR >Mature_166_residues ASDGDWFWPLAGAAVLAWLAYDKWWKEEEPPSPPPPIFAPVSIRPSGLVYVTELDSGAVWRVNADSVKGVRSDRTFWIDQ DHSKNKSERARSIMTLYRVDCDSTATARLSLVAYDGDGNVLIKQDSPHAEETFTPPGSVLGSVFDEVCKSVYDPPPVAPP PPSPSR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 18358; Mature: 18226
Theoretical pI: Translated: 4.54; Mature: 4.54
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 1.2 %Met (Translated Protein) 2.4 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 0.6 %Met (Mature Protein) 1.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MASDGDWFWPLAGAAVLAWLAYDKWWKEEEPPSPPPPIFAPVSIRPSGLVYVTELDSGAV CCCCCCEECHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEECCCCEEEEEECCCCEE WRVNADSVKGVRSDRTFWIDQDHSKNKSERARSIMTLYRVDCDSTATARLSLVAYDGDGN EEEEHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHEECCCCCCCEEEEEEEEECCCCC VLIKQDSPHAEETFTPPGSVLGSVFDEVCKSVYDPPPVAPPPPSPSR EEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC >Mature Secondary Structure ASDGDWFWPLAGAAVLAWLAYDKWWKEEEPPSPPPPIFAPVSIRPSGLVYVTELDSGAV CCCCCEECHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEECCCCEEEEEECCCCEE WRVNADSVKGVRSDRTFWIDQDHSKNKSERARSIMTLYRVDCDSTATARLSLVAYDGDGN EEEEHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHEECCCCCCCEEEEEEEEECCCCC VLIKQDSPHAEETFTPPGSVLGSVFDEVCKSVYDPPPVAPPPPSPSR EEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA