| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is 103486116
Identifier: 103486116
GI number: 103486116
Start: 634108
End: 634782
Strand: Reverse
Name: 103486116
Synonym: Sala_0623
Alternate gene names: NA
Gene position: 634782-634108 (Counterclockwise)
Preceding gene: 103486117
Following gene: 103486114
Centisome position: 18.98
GC content: 64.59
Gene sequence:
>675_bases ATGAGCAAATATGAACCCGTCGCCAAGGCGCCGGTCCGCATCCAGCAGAATATCCTCGCGCGCGGCGAGCGCCGCCTGCT CAACTGGCTGTGCGCGCGGCTGCCCGCGTGGGTGACGCCCGACCAGCTCACCGCGCTCGGCTTTGCAGGCGCGGTGCTCG TCGCCGCGGGGTATCTGCTCAGCTGGTTCGACAGCGAATGGCTGGGGCTGTGCCTTGTCGGCTATATCGTCAACTGGTTC GGCGATTCGCTCGACGGCAGCCTGGCGCGCTGGCGGGGGATCGAGCGGCCGAATTATGGTTATTTCGTCGATCACAGCGT CGATGCGATCGCGACCTTCCTGATGATCAGCGCGATCGGCATGAGCCCCTATATGCGGCTCGACGTCGCGCTGATGGGCG TGATCGGCTATTTCCTGCTGTCGATCCACACCTTCATTTCGGCGAAGATTCTGGGCGAGTTCCGCCTGTCCTATATGGCG GGCGGGCCGACCGAACTGCGGCTGATGCTGATGGCGATGACCGCGCTCATGCCCGTCGTCGGCGGCGCCGACGTTGCCGG AACCAATTTTTCGGCGTTCGACCTGTTCGCGCTCGTCGTCGCGAGCATCCTCGTCACGCTGTTTGTCGTCCAGACGTCGA TGACCGCGCGGATGCTGCGCCGCCGCGGCAACTGA
Upstream 100 bases:
>100_bases CGGCGAACGCGCTGCCCTTTCGCATTTGCGACTTTGCTTCTATGACGGCTCGATGACATCCGGCTGGCGCTTTTGTGACA GACGGCAGCAGAGGGCCCGC
Downstream 100 bases:
>100_bases AAGGCTCAGGGACGCGGGCGCGCCTGCGGATAAGTGCCGAGCAGGCGCAGCGACTTGGTCTGGAAATCCAGCTCCTCCAG CGCGCGGTCGACACGTTCGT
Product: CDP-alcohol phosphatidyltransferase
Products: NA
Alternate protein names: PgsA-Like Protein
Number of amino acids: Translated: 224; Mature: 223
Protein sequence:
>224_residues MSKYEPVAKAPVRIQQNILARGERRLLNWLCARLPAWVTPDQLTALGFAGAVLVAAGYLLSWFDSEWLGLCLVGYIVNWF GDSLDGSLARWRGIERPNYGYFVDHSVDAIATFLMISAIGMSPYMRLDVALMGVIGYFLLSIHTFISAKILGEFRLSYMA GGPTELRLMLMAMTALMPVVGGADVAGTNFSAFDLFALVVASILVTLFVVQTSMTARMLRRRGN
Sequences:
>Translated_224_residues MSKYEPVAKAPVRIQQNILARGERRLLNWLCARLPAWVTPDQLTALGFAGAVLVAAGYLLSWFDSEWLGLCLVGYIVNWF GDSLDGSLARWRGIERPNYGYFVDHSVDAIATFLMISAIGMSPYMRLDVALMGVIGYFLLSIHTFISAKILGEFRLSYMA GGPTELRLMLMAMTALMPVVGGADVAGTNFSAFDLFALVVASILVTLFVVQTSMTARMLRRRGN >Mature_223_residues SKYEPVAKAPVRIQQNILARGERRLLNWLCARLPAWVTPDQLTALGFAGAVLVAAGYLLSWFDSEWLGLCLVGYIVNWFG DSLDGSLARWRGIERPNYGYFVDHSVDAIATFLMISAIGMSPYMRLDVALMGVIGYFLLSIHTFISAKILGEFRLSYMAG GPTELRLMLMAMTALMPVVGGADVAGTNFSAFDLFALVVASILVTLFVVQTSMTARMLRRRGN
Specific function: Unknown
COG id: COG0558
COG function: function code I; Phosphatidylglycerophosphate synthase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 24671; Mature: 24540
Theoretical pI: Translated: 9.05; Mature: 9.05
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 5.4 %Met (Translated Protein) 6.2 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 4.9 %Met (Mature Protein) 5.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSKYEPVAKAPVRIQQNILARGERRLLNWLCARLPAWVTPDQLTALGFAGAVLVAAGYLL CCCCCCHHHCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHH SWFDSEWLGLCLVGYIVNWFGDSLDGSLARWRGIERPNYGYFVDHSVDAIATFLMISAIG HHHCHHHHHHHHHHHHHHHHCCCCCCHHHHHCCCCCCCCCEEECCCHHHHHHHHHHHHHC MSPYMRLDVALMGVIGYFLLSIHTFISAKILGEFRLSYMAGGPTELRLMLMAMTALMPVV CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH GGADVAGTNFSAFDLFALVVASILVTLFVVQTSMTARMLRRRGN CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure SKYEPVAKAPVRIQQNILARGERRLLNWLCARLPAWVTPDQLTALGFAGAVLVAAGYLL CCCCCHHHCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHH SWFDSEWLGLCLVGYIVNWFGDSLDGSLARWRGIERPNYGYFVDHSVDAIATFLMISAIG HHHCHHHHHHHHHHHHHHHHCCCCCCHHHHHCCCCCCCCCEEECCCHHHHHHHHHHHHHC MSPYMRLDVALMGVIGYFLLSIHTFISAKILGEFRLSYMAGGPTELRLMLMAMTALMPVV CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH GGADVAGTNFSAFDLFALVVASILVTLFVVQTSMTARMLRRRGN CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA