Click here to switch to the map view.

The map label for this gene is cycM [H]

Identifier: 103486114

GI number: 103486114

Start: 632389

End: 633027

Strand: Reverse

Name: cycM [H]

Synonym: Sala_0621

Alternate gene names: 103486114

Gene position: 633027-632389 (Counterclockwise)

Preceding gene: 103486116

Following gene: 103486113

Centisome position: 18.92

GC content: 66.35

Gene sequence:

>639_bases
ATGGACAATCGCAACAATACCATTGCCGGCTGGGTGCTGTTCGCCGGCATATGCGCGCTGGGCCTGACCATCGGGTCGAG
CATGTTGTTCGCGACCCACGCCCCCGAAAAGCCCGGATATCCGATCGAAGACGCCGAAGCCGGTGCAGGCGGCGGCGAAT
CGGCGGTGCCGCTCGCCAACCTGCTCGCAGCCGCCGACCCCGCGAAGGGCGAAGCGGTATTCGCGAAATGCGCGGCATGC
CACACGATCAACGCGGGCGGAGCCAACGGCATCGGTCCCAATCTTTACGGCGCGCTGGGCAAGGCGCATGGCCATGTTCC
CGGCTTTGCCTATTCGGAGGCGCTGAAGAGCGTTCCCGGAAACTGGGACTTCGCGAGCATGGACGAATGGCTGAAAAGCC
CGCGTAAATATGCGCCGGGCACCAAGATGTCCTTTGCCGGCCTGAGCAGCCCCGAAGATCGCGCGAACCTGATCGTCTAT
ATGAACACGCAGGGATCGAACCTGCCGCTGCCGCCGGTCGAAGAGGTCGCGACCGCCGATGCCGCAGCGGGCGCTGCCGA
AGGCGCTGCACCGGCTGCAGAAGGCGCGGCCGCCCCGGCGGCCGAAGGCGCCGCCGCCCCGGCCGAAGCCACGAAATAA

Upstream 100 bases:

>100_bases
CGATTTCATCCCCTTGCGCCGCCGCCGCCGCGCCAGTAAGGGAGCCTCCAAATCACAAAGGCGCTCCCACACGAGCGCCA
GCTAACGGGGCTGTTAGAGC

Downstream 100 bases:

>100_bases
TGCGCACCGCGCCCGTCCTGCTGGCGGGCGCGCTGCTGCTCGCCGGCTGCGGCAAGAGCGACGCGCCGCCGACCGACGAC
CCGGTGGCCGACAGCCCGGC

Product: cytochrome c, class I

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 212; Mature: 212

Protein sequence:

>212_residues
MDNRNNTIAGWVLFAGICALGLTIGSSMLFATHAPEKPGYPIEDAEAGAGGGESAVPLANLLAAADPAKGEAVFAKCAAC
HTINAGGANGIGPNLYGALGKAHGHVPGFAYSEALKSVPGNWDFASMDEWLKSPRKYAPGTKMSFAGLSSPEDRANLIVY
MNTQGSNLPLPPVEEVATADAAAGAAEGAAPAAEGAAAPAAEGAAAPAEATK

Sequences:

>Translated_212_residues
MDNRNNTIAGWVLFAGICALGLTIGSSMLFATHAPEKPGYPIEDAEAGAGGGESAVPLANLLAAADPAKGEAVFAKCAAC
HTINAGGANGIGPNLYGALGKAHGHVPGFAYSEALKSVPGNWDFASMDEWLKSPRKYAPGTKMSFAGLSSPEDRANLIVY
MNTQGSNLPLPPVEEVATADAAAGAAEGAAPAAEGAAAPAAEGAAAPAEATK
>Mature_212_residues
MDNRNNTIAGWVLFAGICALGLTIGSSMLFATHAPEKPGYPIEDAEAGAGGGESAVPLANLLAAADPAKGEAVFAKCAAC
HTINAGGANGIGPNLYGALGKAHGHVPGFAYSEALKSVPGNWDFASMDEWLKSPRKYAPGTKMSFAGLSSPEDRANLIVY
MNTQGSNLPLPPVEEVATADAAAGAAEGAAPAAEGAAAPAAEGAAAPAEATK

Specific function: May be involved in electron transfer from bc1 complex to aa3 [H]

COG id: COG3474

COG function: function code C; Cytochrome c2

Gene ontology:

Cell location: Cell membrane; Single-pass type II membrane protein [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the cytochrome c family [H]

Homologues:

Organism=Homo sapiens, GI11128019, Length=98, Percent_Identity=42.8571428571429, Blast_Score=96, Evalue=2e-20,
Organism=Caenorhabditis elegans, GI17566554, Length=105, Percent_Identity=39.0476190476191, Blast_Score=87, Evalue=6e-18,
Organism=Caenorhabditis elegans, GI17539604, Length=102, Percent_Identity=41.1764705882353, Blast_Score=86, Evalue=1e-17,
Organism=Saccharomyces cerevisiae, GI6320796, Length=94, Percent_Identity=48.936170212766, Blast_Score=104, Evalue=1e-23,
Organism=Saccharomyces cerevisiae, GI6322508, Length=103, Percent_Identity=40.7766990291262, Blast_Score=93, Evalue=3e-20,
Organism=Drosophila melanogaster, GI17137228, Length=101, Percent_Identity=45.5445544554455, Blast_Score=104, Evalue=5e-23,
Organism=Drosophila melanogaster, GI17137204, Length=103, Percent_Identity=41.747572815534, Blast_Score=96, Evalue=2e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002327
- InterPro:   IPR009056
- InterPro:   IPR003088 [H]

Pfam domain/function: PF00034 Cytochrom_C [H]

EC number: NA

Molecular weight: Translated: 21075; Mature: 21075

Theoretical pI: Translated: 4.55; Mature: 4.55

Prosite motif: PS51007 CYTC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDNRNNTIAGWVLFAGICALGLTIGSSMLFATHAPEKPGYPIEDAEAGAGGGESAVPLAN
CCCCCCCHHHHHHHHHHHHHHHHHCCHHEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHH
LLAAADPAKGEAVFAKCAACHTINAGGANGIGPNLYGALGKAHGHVPGFAYSEALKSVPG
HHHHCCCCCCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHCCC
NWDFASMDEWLKSPRKYAPGTKMSFAGLSSPEDRANLIVYMNTQGSNLPLPPVEEVATAD
CCCHHHHHHHHHCCHHCCCCCCEEECCCCCCCCCCCEEEEECCCCCCCCCCCHHHHHHHH
AAAGAAEGAAPAAEGAAAPAAEGAAAPAEATK
HHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MDNRNNTIAGWVLFAGICALGLTIGSSMLFATHAPEKPGYPIEDAEAGAGGGESAVPLAN
CCCCCCCHHHHHHHHHHHHHHHHHCCHHEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHH
LLAAADPAKGEAVFAKCAACHTINAGGANGIGPNLYGALGKAHGHVPGFAYSEALKSVPG
HHHHCCCCCCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHCCC
NWDFASMDEWLKSPRKYAPGTKMSFAGLSSPEDRANLIVYMNTQGSNLPLPPVEEVATAD
CCCHHHHHHHHHCCHHCCCCCCEEECCCCCCCCCCCEEEEECCCCCCCCCCCHHHHHHHH
AAAGAAEGAAPAAEGAAAPAAEGAAAPAEATK
HHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11743193; 11743194 [H]