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The map label for this gene is cycM [H]

Identifier: 103486113

GI number: 103486113

Start: 631946

End: 632389

Strand: Reverse

Name: cycM [H]

Synonym: Sala_0620

Alternate gene names: 103486113

Gene position: 632389-631946 (Counterclockwise)

Preceding gene: 103486114

Following gene: 103486110

Centisome position: 18.9

GC content: 70.27

Gene sequence:

>444_bases
ATGCGCACCGCGCCCGTCCTGCTGGCGGGCGCGCTGCTGCTCGCCGGCTGCGGCAAGAGCGACGCGCCGCCGACCGACGA
CCCGGTGGCCGACAGCCCGGCGACGGGCGAGTCGGCGACCGACGCGCCCGCGGTCGAACCGACTGCGGCGATGGGCGAGC
AAATCTTCCGCCGCTGCGTCGCCTGTCACACCGTCGACAAGGGCGGGCGCCACGGTATCGGCCCGAATCTGCACGGCATC
GTCGGTGCCCCCGTCGCGGCAAAGGCAGGCTTTTCCTATTCAGGCGCGATGAAGGCCAAGGGTGGCGTGTGGGACGAAGC
CGCGCTCGACGCCTATCTCAAAGCGCCGATGAAGGACGTCCCCGGCACGCGCATGGCCTTTGCGGGGGTGGTCGACGCCA
CCGACCGCAAGGCGCTGATCCTGTATCTGCAAGCGCAGAAATAG

Upstream 100 bases:

>100_bases
ATGCCGCAGCGGGCGCTGCCGAAGGCGCTGCACCGGCTGCAGAAGGCGCGGCCGCCCCGGCGGCCGAAGGCGCCGCCGCC
CCGGCCGAAGCCACGAAATA

Downstream 100 bases:

>100_bases
TCCCATCCCCCTTGATGGGGAAGGATATGCAGCTTTGTATCGCGACAGCCGGCCAGGCGACGTTGGATGGGGGTGACGGC
GCGTCCCCGCGCCATCGAGT

Product: cytochrome c, class I

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 147; Mature: 147

Protein sequence:

>147_residues
MRTAPVLLAGALLLAGCGKSDAPPTDDPVADSPATGESATDAPAVEPTAAMGEQIFRRCVACHTVDKGGRHGIGPNLHGI
VGAPVAAKAGFSYSGAMKAKGGVWDEAALDAYLKAPMKDVPGTRMAFAGVVDATDRKALILYLQAQK

Sequences:

>Translated_147_residues
MRTAPVLLAGALLLAGCGKSDAPPTDDPVADSPATGESATDAPAVEPTAAMGEQIFRRCVACHTVDKGGRHGIGPNLHGI
VGAPVAAKAGFSYSGAMKAKGGVWDEAALDAYLKAPMKDVPGTRMAFAGVVDATDRKALILYLQAQK
>Mature_147_residues
MRTAPVLLAGALLLAGCGKSDAPPTDDPVADSPATGESATDAPAVEPTAAMGEQIFRRCVACHTVDKGGRHGIGPNLHGI
VGAPVAAKAGFSYSGAMKAKGGVWDEAALDAYLKAPMKDVPGTRMAFAGVVDATDRKALILYLQAQK

Specific function: May be involved in electron transfer from bc1 complex to aa3 [H]

COG id: COG3474

COG function: function code C; Cytochrome c2

Gene ontology:

Cell location: Cell membrane; Single-pass type II membrane protein [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the cytochrome c family [H]

Homologues:

Organism=Homo sapiens, GI11128019, Length=94, Percent_Identity=46.8085106382979, Blast_Score=97, Evalue=4e-21,
Organism=Caenorhabditis elegans, GI17539604, Length=96, Percent_Identity=41.6666666666667, Blast_Score=84, Evalue=3e-17,
Organism=Caenorhabditis elegans, GI17566554, Length=96, Percent_Identity=42.7083333333333, Blast_Score=81, Evalue=2e-16,
Organism=Saccharomyces cerevisiae, GI6322508, Length=98, Percent_Identity=46.9387755102041, Blast_Score=100, Evalue=8e-23,
Organism=Saccharomyces cerevisiae, GI6320796, Length=107, Percent_Identity=42.0560747663551, Blast_Score=94, Evalue=6e-21,
Organism=Drosophila melanogaster, GI17137228, Length=95, Percent_Identity=48.4210526315789, Blast_Score=102, Evalue=6e-23,
Organism=Drosophila melanogaster, GI17137204, Length=100, Percent_Identity=46, Blast_Score=98, Evalue=2e-21,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002327
- InterPro:   IPR009056
- InterPro:   IPR003088 [H]

Pfam domain/function: PF00034 Cytochrom_C [H]

EC number: NA

Molecular weight: Translated: 14944; Mature: 14944

Theoretical pI: Translated: 7.44; Mature: 7.44

Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS51007 CYTC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
5.4 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
5.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRTAPVLLAGALLLAGCGKSDAPPTDDPVADSPATGESATDAPAVEPTAAMGEQIFRRCV
CCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
ACHTVDKGGRHGIGPNLHGIVGAPVAAKAGFSYSGAMKAKGGVWDEAALDAYLKAPMKDV
HHHCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCHHHHHHHHHCCHHCC
PGTRMAFAGVVDATDRKALILYLQAQK
CCCCEEHHHEECCCCCCEEEEEEEECC
>Mature Secondary Structure
MRTAPVLLAGALLLAGCGKSDAPPTDDPVADSPATGESATDAPAVEPTAAMGEQIFRRCV
CCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
ACHTVDKGGRHGIGPNLHGIVGAPVAAKAGFSYSGAMKAKGGVWDEAALDAYLKAPMKDV
HHHCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCHHHHHHHHHCCHHCC
PGTRMAFAGVVDATDRKALILYLQAQK
CCCCEEHHHEECCCCCCEEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11743193; 11743194 [H]