Definition Sphingopyxis alaskensis RB2256, complete genome.
Accession NC_008048
Length 3,345,170

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The map label for this gene is 103486100

Identifier: 103486100

GI number: 103486100

Start: 617263

End: 618393

Strand: Reverse

Name: 103486100

Synonym: Sala_0607

Alternate gene names: NA

Gene position: 618393-617263 (Counterclockwise)

Preceding gene: 103486101

Following gene: 103486099

Centisome position: 18.49

GC content: 70.47

Gene sequence:

>1131_bases
ATGAAGCCCGAACTGACCCTGACCGCCCGCTCGACGTGGCGCGACCCGCCGCCCGAACGGTCGGCGGGGCCGGGGCGCGC
TTTCTGGGCGGCGATCGGGGGCGTTTCGGTCGTCGCCTGCTTCGCCTTTCTGTTGTCGAGCGGGCAGTTTCGCGCGCCGT
CGATCTTCGCCCCCTACAGCGTGTCGGTGCCGGTCGATTTCAGGCCCTATGACCCCGAACGCTGGGCGATCATGACCGCC
GGGGATTATGAGGCGGCGCTGAAGATCGACCCCACGCTGCCCGACCCGCGCAGCATCGACTTTTCCGACGCCACCGCGCT
GCCCCCCGCCGACCCCGCGGCGCTGCGCGAAGAGGCATTCGCCGGACCGCCTGCCAGGCCCTATGTCTTTCGCGGGCTGA
CCGCGCTCGATCGCGAACGCGCGCATTATTGCCTGACCGCCGCCATCTATTACGAGGCGGCGTCCGAAAGCGACGACGGG
ATGCGCGGCGTCGCGCAGACGATCATCAACCGCGTCCGCCATCCCAGCTTTCCGGGCACCGTGTGCGGCGTCGTTTTCCA
GGGATCGCAGCGCGCCGGGGTGTGCCAGTTCACCTTTGCCTGCGACGGCGCGATGGCGCGCGCACCCGAACGGCGGAACT
GGCTGCGCGCGAGCCGCGTGGCCTCGGCGGCGCTCGGCGGTCAGGTGTATGCCAAGGTGGGGCTGGCCACCCATTATCAT
ACGCAGGCGATCTGGCCGCGCTGGGGCAAAAGCCTGGTGATGACCAACATCGTCGGCGCGCACATCTTTCACCGCTGGCG
CGGGCGCTGGGGAATGCCCGACGCCTTTCGCGCACCCTATCTGGGCCGCGAACCAGTGCCGGGCCCCTATCTGCCGGTGG
CCCAGCAGCTCGCGATCCTGAAGGGTCAGGGCATTGCGCCCGGTGCCGGCCCGCTTCCCGCACTGACTGGCGCCGCAGCA
CCGCTCCCCGATGCCGCGCCCGCGCCGCTGCTGCCCGGTGCGCTGGCCCCAGCACCCCCCGGCGCCCCGGCCGCCGCAGC
GCCCGCCGCGCCGAGCTATACCGACCCCCGTCTCAACCAATCTGGACAGGTCCGCGAGGAGTTTTCAAAGAGCGGAGAGT
GGAAACGCTGA

Upstream 100 bases:

>100_bases
CCAACGCACATGCCTCGCAACATTTTATAGGTGTTTCCGTGTATAGGTTGACCGGCCCGGCCTGTATCTCGCAGACGGAT
CGAGGAATGATGCCGCCGTT

Downstream 100 bases:

>100_bases
GCCGATCAGTCTAGGCTGTCGCCTTTCAAAGGAGCGAGGTGGCCGTGGGACATGTCAAAGGAATCGGCGGGCTGTTTTTC
CGCGCGCGCAATCCCGAGGC

Product: cell wall hydrolase, SleB

Products: NA

Alternate protein names: Cell Wall Hydrolase Family; SleB-Like Protein; Hydrolase; Cell Wall Hydrolase; Spore Cortex-Lytic; Cell Wall Hydrolase Domain Protein; Spore-Cortex-Lytic Prepeptide; Cell Wall Hydrolase Sleb; Cell Wall Hydrolase Domain-Containing Protein; Cell Wall Hydrolase Family Protein

Number of amino acids: Translated: 376; Mature: 376

Protein sequence:

>376_residues
MKPELTLTARSTWRDPPPERSAGPGRAFWAAIGGVSVVACFAFLLSSGQFRAPSIFAPYSVSVPVDFRPYDPERWAIMTA
GDYEAALKIDPTLPDPRSIDFSDATALPPADPAALREEAFAGPPARPYVFRGLTALDRERAHYCLTAAIYYEAASESDDG
MRGVAQTIINRVRHPSFPGTVCGVVFQGSQRAGVCQFTFACDGAMARAPERRNWLRASRVASAALGGQVYAKVGLATHYH
TQAIWPRWGKSLVMTNIVGAHIFHRWRGRWGMPDAFRAPYLGREPVPGPYLPVAQQLAILKGQGIAPGAGPLPALTGAAA
PLPDAAPAPLLPGALAPAPPGAPAAAAPAAPSYTDPRLNQSGQVREEFSKSGEWKR

Sequences:

>Translated_376_residues
MKPELTLTARSTWRDPPPERSAGPGRAFWAAIGGVSVVACFAFLLSSGQFRAPSIFAPYSVSVPVDFRPYDPERWAIMTA
GDYEAALKIDPTLPDPRSIDFSDATALPPADPAALREEAFAGPPARPYVFRGLTALDRERAHYCLTAAIYYEAASESDDG
MRGVAQTIINRVRHPSFPGTVCGVVFQGSQRAGVCQFTFACDGAMARAPERRNWLRASRVASAALGGQVYAKVGLATHYH
TQAIWPRWGKSLVMTNIVGAHIFHRWRGRWGMPDAFRAPYLGREPVPGPYLPVAQQLAILKGQGIAPGAGPLPALTGAAA
PLPDAAPAPLLPGALAPAPPGAPAAAAPAAPSYTDPRLNQSGQVREEFSKSGEWKR
>Mature_376_residues
MKPELTLTARSTWRDPPPERSAGPGRAFWAAIGGVSVVACFAFLLSSGQFRAPSIFAPYSVSVPVDFRPYDPERWAIMTA
GDYEAALKIDPTLPDPRSIDFSDATALPPADPAALREEAFAGPPARPYVFRGLTALDRERAHYCLTAAIYYEAASESDDG
MRGVAQTIINRVRHPSFPGTVCGVVFQGSQRAGVCQFTFACDGAMARAPERRNWLRASRVASAALGGQVYAKVGLATHYH
TQAIWPRWGKSLVMTNIVGAHIFHRWRGRWGMPDAFRAPYLGREPVPGPYLPVAQQLAILKGQGIAPGAGPLPALTGAAA
PLPDAAPAPLLPGALAPAPPGAPAAAAPAAPSYTDPRLNQSGQVREEFSKSGEWKR

Specific function: Unknown

COG id: COG3773

COG function: function code M; Cell wall hydrolyses involved in spore germination

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 40161; Mature: 40161

Theoretical pI: Translated: 9.47; Mature: 9.47

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKPELTLTARSTWRDPPPERSAGPGRAFWAAIGGVSVVACFAFLLSSGQFRAPSIFAPYS
CCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEECCEE
VSVPVDFRPYDPERWAIMTAGDYEAALKIDPTLPDPRSIDFSDATALPPADPAALREEAF
EECCCCCCCCCCCCEEEEECCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHC
AGPPARPYVFRGLTALDRERAHYCLTAAIYYEAASESDDGMRGVAQTIINRVRHPSFPGT
CCCCCCCHHHHCHHHHHHHHHHHEEEHHEEEHHCCCCCCHHHHHHHHHHHHHCCCCCCCC
VCGVVFQGSQRAGVCQFTFACDGAMARAPERRNWLRASRVASAALGGQVYAKVGLATHYH
EEEEEEECCCCCCEEEEEEECCCHHHCCCHHHHHHHHHHHHHHHHCCCEEEEHHHHHHHH
TQAIWPRWGKSLVMTNIVGAHIFHRWRGRWGMPDAFRAPYLGREPVPGPYLPVAQQLAIL
HHHHCHHHCCHHHHHHHHHHHHHHHHCCCCCCCHHHCCCCCCCCCCCCCCHHHHHHHHHH
KGQGIAPGAGPLPALTGAAAPLPDAAPAPLLPGALAPAPPGAPAAAAPAAPSYTDPRLNQ
HCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
SGQVREEFSKSGEWKR
CCCHHHHHHHCCCCCC
>Mature Secondary Structure
MKPELTLTARSTWRDPPPERSAGPGRAFWAAIGGVSVVACFAFLLSSGQFRAPSIFAPYS
CCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEECCEE
VSVPVDFRPYDPERWAIMTAGDYEAALKIDPTLPDPRSIDFSDATALPPADPAALREEAF
EECCCCCCCCCCCCEEEEECCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHC
AGPPARPYVFRGLTALDRERAHYCLTAAIYYEAASESDDGMRGVAQTIINRVRHPSFPGT
CCCCCCCHHHHCHHHHHHHHHHHEEEHHEEEHHCCCCCCHHHHHHHHHHHHHCCCCCCCC
VCGVVFQGSQRAGVCQFTFACDGAMARAPERRNWLRASRVASAALGGQVYAKVGLATHYH
EEEEEEECCCCCCEEEEEEECCCHHHCCCHHHHHHHHHHHHHHHHCCCEEEEHHHHHHHH
TQAIWPRWGKSLVMTNIVGAHIFHRWRGRWGMPDAFRAPYLGREPVPGPYLPVAQQLAIL
HHHHCHHHCCHHHHHHHHHHHHHHHHCCCCCCCHHHCCCCCCCCCCCCCCHHHHHHHHHH
KGQGIAPGAGPLPALTGAAAPLPDAAPAPLLPGALAPAPPGAPAAAAPAAPSYTDPRLNQ
HCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
SGQVREEFSKSGEWKR
CCCHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA