| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is 103486089
Identifier: 103486089
GI number: 103486089
Start: 603804
End: 605306
Strand: Reverse
Name: 103486089
Synonym: Sala_0596
Alternate gene names: NA
Gene position: 605306-603804 (Counterclockwise)
Preceding gene: 103486090
Following gene: 103486087
Centisome position: 18.09
GC content: 66.0
Gene sequence:
>1503_bases ATGGACAAGCCGCGGCAGGGCTTTGCCGGCCTGTGGAATATCAGCTTCGGCTTTTTCGGCATCCAGATCGGCTTTGCGCT GCAAAATGCGAATATGAGCCGCATCTTCCAGTCGCTCGGCGAGGATATCGAGCGGCTGCCCGGTCTGTGGGTCGCCGCGC CGCTGACCGGGCTGCTCGTCCAGCCGATCGTCGGGCATCTGAGCGACAGGACCTGGCTCGGCCGCCTCGGTCGGCGCCGG CCCTATTTCCTGGCGGGGGCGATCCTCGCCGCGATCGCGCTGTTCGCGATGCCCGAAAGCCCGGCCATCTGGTTCGCGGC GGCGATGCTGTGGCTGCTCGACGCCTCGCTCAACATTTCGATGGAGCCGTTCCGCGCCTTTGTCGGCGACATGTTGAGGA AGGACCAGCATAGCGCGGGCTATGCGGTGCAGACCGCCTTCATCGGGGCGGGCGCGGTCGTCGGATCGCTGTTTCCCGCG GCGATGGAGGCGATGGGGGTCGCCAATGTCGCGCCGCCGGGACAGATTCCCGATACGGTCAAATATGCCTTCTGGTTCGG CGGCGCGGCGCTGTTCCTGTCGGTGCTGTGGACGATCGTGACGACGCACGAATATGACCCGGCAACCATGGCCGCCTTTG CGGCATCAAGCCCCGTGGCGGCCGCGCTACCCGCGCAGGACCTGGCCGCACGCAGCTATGGCACCGGCCTGGTCTGGATC GCCGCGGGCATTGCGGTCGCCGCGATCCAGCAGCATTTCGCGCTGCTGCGCGAGGTGCTGCTGCTCGGCGCGCTGCTCAT CGCCTATGGGCTGGCGAGCATCGCCGCGATCGCGATGGCGCGGCGCGGACACAGCACCAATATGCTGGCGAGCATCATCG GCGATTTCGCCGGGATGCCGCTGCTGATGAAGCGGCTCGCGCTCGTACAATTCTTCAGCTGGTCGGCGCTGTTCATCATG TGGATCAACACGACGCCGATCGTCGCCCAATATCATTATGGCGCGCTCGACGCCGCGAGCGCCGACTATCAGGCGGCGGC GAACTGGGTCGGCCAGCTGTTCGCCATCTATAACGGCGTCGCGGCGGTGGCGGCGCTGACCCTGCTGCCGTGGCTGTCGC GGCGGCTGGGGCAGGCGCCAACGCACATGATCGGCCTTGGCTGCGGGGCGATTGGCTTTGCCAGCTTCTTCATGCTGCGC GATCCGGCGCTGCTGATCGTCAGCGAGATTTTCATCGGCATCTTCTGGGCCTCGGTGCTCGCCATGCCTTATGCGATCCT CGCGTCGAGCCTGCCGCAGGCAAAGCTCGGCATCTATATGGGATTGTTCAACGTCTTCATCGTGATCCCGCAGCTGCTCG TCGCGGCGCTGATGGGATCGGTGATGAAGGCGTTCTTCCCCGGCGAGCCCATCCATACGATGGCGTTCGCCGCGATCACG CTGCTCGTCGCGATCGCCGCCATGGCGCGCATCGTACCGATGCTCGCCAGGCAGCGGGGCTGA
Upstream 100 bases:
>100_bases ATTCGTATACGCAAGCCGCCAAGCCGCTTGCCCTGCCCGCCGCACGCTGCAACACCGGACACCATGAGAGCCGCGCGCGC GGCCCGTCGGGGAGAGACGC
Downstream 100 bases:
>100_bases TACAGCACCGAAACGCCCGGCCCGACTCAACCGTCGATCAGCATGATCGCATCCGCCATCAGCGCGGCCGCCTCGTCCGG GCTGCAGGAACCGGCCAGCG
Product: major facilitator transporter
Products: NA
Alternate protein names: Sugar Transporter; Transporter Facilitator Family; Facilitator Superfamily Permease; Facilitator Superfamily Protein; SugarCation Symporter; Facilitator Superfamily Transporter Permease; Cytoplasmic Membrane Maltose Transporter MalY; Transport Protein Facilitator Superfamily Protein; MFS Superfamily Sugcific Permease; Facilitator Superfamily Transmembrane Protein; Facilitator Family Transporter; Sucrose Transporter Protein
Number of amino acids: Translated: 500; Mature: 500
Protein sequence:
>500_residues MDKPRQGFAGLWNISFGFFGIQIGFALQNANMSRIFQSLGEDIERLPGLWVAAPLTGLLVQPIVGHLSDRTWLGRLGRRR PYFLAGAILAAIALFAMPESPAIWFAAAMLWLLDASLNISMEPFRAFVGDMLRKDQHSAGYAVQTAFIGAGAVVGSLFPA AMEAMGVANVAPPGQIPDTVKYAFWFGGAALFLSVLWTIVTTHEYDPATMAAFAASSPVAAALPAQDLAARSYGTGLVWI AAGIAVAAIQQHFALLREVLLLGALLIAYGLASIAAIAMARRGHSTNMLASIIGDFAGMPLLMKRLALVQFFSWSALFIM WINTTPIVAQYHYGALDAASADYQAAANWVGQLFAIYNGVAAVAALTLLPWLSRRLGQAPTHMIGLGCGAIGFASFFMLR DPALLIVSEIFIGIFWASVLAMPYAILASSLPQAKLGIYMGLFNVFIVIPQLLVAALMGSVMKAFFPGEPIHTMAFAAIT LLVAIAAMARIVPMLARQRG
Sequences:
>Translated_500_residues MDKPRQGFAGLWNISFGFFGIQIGFALQNANMSRIFQSLGEDIERLPGLWVAAPLTGLLVQPIVGHLSDRTWLGRLGRRR PYFLAGAILAAIALFAMPESPAIWFAAAMLWLLDASLNISMEPFRAFVGDMLRKDQHSAGYAVQTAFIGAGAVVGSLFPA AMEAMGVANVAPPGQIPDTVKYAFWFGGAALFLSVLWTIVTTHEYDPATMAAFAASSPVAAALPAQDLAARSYGTGLVWI AAGIAVAAIQQHFALLREVLLLGALLIAYGLASIAAIAMARRGHSTNMLASIIGDFAGMPLLMKRLALVQFFSWSALFIM WINTTPIVAQYHYGALDAASADYQAAANWVGQLFAIYNGVAAVAALTLLPWLSRRLGQAPTHMIGLGCGAIGFASFFMLR DPALLIVSEIFIGIFWASVLAMPYAILASSLPQAKLGIYMGLFNVFIVIPQLLVAALMGSVMKAFFPGEPIHTMAFAAIT LLVAIAAMARIVPMLARQRG >Mature_500_residues MDKPRQGFAGLWNISFGFFGIQIGFALQNANMSRIFQSLGEDIERLPGLWVAAPLTGLLVQPIVGHLSDRTWLGRLGRRR PYFLAGAILAAIALFAMPESPAIWFAAAMLWLLDASLNISMEPFRAFVGDMLRKDQHSAGYAVQTAFIGAGAVVGSLFPA AMEAMGVANVAPPGQIPDTVKYAFWFGGAALFLSVLWTIVTTHEYDPATMAAFAASSPVAAALPAQDLAARSYGTGLVWI AAGIAVAAIQQHFALLREVLLLGALLIAYGLASIAAIAMARRGHSTNMLASIIGDFAGMPLLMKRLALVQFFSWSALFIM WINTTPIVAQYHYGALDAASADYQAAANWVGQLFAIYNGVAAVAALTLLPWLSRRLGQAPTHMIGLGCGAIGFASFFMLR DPALLIVSEIFIGIFWASVLAMPYAILASSLPQAKLGIYMGLFNVFIVIPQLLVAALMGSVMKAFFPGEPIHTMAFAAIT LLVAIAAMARIVPMLARQRG
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 53387; Mature: 53387
Theoretical pI: Translated: 9.58; Mature: 9.58
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 4.6 %Met (Translated Protein) 4.8 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 4.6 %Met (Mature Protein) 4.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDKPRQGFAGLWNISFGFFGIQIGFALQNANMSRIFQSLGEDIERLPGLWVAAPLTGLLV CCCCCCCCCHHHCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCEEHHHHHHHHH QPIVGHLSDRTWLGRLGRRRPYFLAGAILAAIALFAMPESPAIWFAAAMLWLLDASLNIS HHHHHHHCCCHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCC MEPFRAFVGDMLRKDQHSAGYAVQTAFIGAGAVVGSLFPAAMEAMGVANVAPPGQIPDTV HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHH KYAFWFGGAALFLSVLWTIVTTHEYDPATMAAFAASSPVAAALPAQDLAARSYGTGLVWI HHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCHHHCCHHHHHHHHCCCCHHHH AAGIAVAAIQQHFALLREVLLLGALLIAYGLASIAAIAMARRGHSTNMLASIIGDFAGMP HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCHH LLMKRLALVQFFSWSALFIMWINTTPIVAQYHYGALDAASADYQAAANWVGQLFAIYNGV HHHHHHHHHHHHHHHHHEEEEECCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHH AAVAALTLLPWLSRRLGQAPTHMIGLGCGAIGFASFFMLRDPALLIVSEIFIGIFWASVL HHHHHHHHHHHHHHHHCCCCCHHHHCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH AMPYAILASSLPQAKLGIYMGLFNVFIVIPQLLVAALMGSVMKAFFPGEPIHTMAFAAIT HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH LLVAIAAMARIVPMLARQRG HHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure MDKPRQGFAGLWNISFGFFGIQIGFALQNANMSRIFQSLGEDIERLPGLWVAAPLTGLLV CCCCCCCCCHHHCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCEEHHHHHHHHH QPIVGHLSDRTWLGRLGRRRPYFLAGAILAAIALFAMPESPAIWFAAAMLWLLDASLNIS HHHHHHHCCCHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCC MEPFRAFVGDMLRKDQHSAGYAVQTAFIGAGAVVGSLFPAAMEAMGVANVAPPGQIPDTV HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHH KYAFWFGGAALFLSVLWTIVTTHEYDPATMAAFAASSPVAAALPAQDLAARSYGTGLVWI HHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCHHHCCHHHHHHHHCCCCHHHH AAGIAVAAIQQHFALLREVLLLGALLIAYGLASIAAIAMARRGHSTNMLASIIGDFAGMP HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCHH LLMKRLALVQFFSWSALFIMWINTTPIVAQYHYGALDAASADYQAAANWVGQLFAIYNGV HHHHHHHHHHHHHHHHHEEEEECCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHH AAVAALTLLPWLSRRLGQAPTHMIGLGCGAIGFASFFMLRDPALLIVSEIFIGIFWASVL HHHHHHHHHHHHHHHHCCCCCHHHHCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH AMPYAILASSLPQAKLGIYMGLFNVFIVIPQLLVAALMGSVMKAFFPGEPIHTMAFAAIT HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH LLVAIAAMARIVPMLARQRG HHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA