| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is 103486087
Identifier: 103486087
GI number: 103486087
Start: 602400
End: 603122
Strand: Reverse
Name: 103486087
Synonym: Sala_0594
Alternate gene names: NA
Gene position: 603122-602400 (Counterclockwise)
Preceding gene: 103486089
Following gene: 103486086
Centisome position: 18.03
GC content: 64.59
Gene sequence:
>723_bases ATGTCTGCCCAGACCACCGAGATCGCCGACGGCATTTTCCGGCTGTCGGTTTTCGTCCCCGACATCGAACCGCCGGCGGG CTTCACCTTCAACAGCTTCCTGATCCTCGATGACGAGCCGCTGCTTTTTCACGCCGGTCAGCGAAGCATGTTTCCGCTTT TTTCGGCGGCCGTCGAAGCGTTGATGCCACTCGACCGGCTGCGCTGGCTGAGTTTCGGCCATGTCGAGGCCGACGAATGT GGCGCGATGAATCTGTGGTTGCAGGCGGCGCCGCATGCGCAGGTCGTGCACGGCGAAACCGCCTGCTCGATCTCGCTCAA CGATCTTGCGGATCGGGCGCCGCGCGTGGTGCAGGACGGCGAACTGATCACGGCGGGCCGACGCCGCATCCGCTATTTCG ACACCCCGCACGTCCCGCATGCGTGGGAGTCGGGCGTGATTTTCGAAGAAACGTCGGCAACGCTGTTCTGCGGCGACCTG TTCACGCAGTTCGGATCCCGGGAGATGACGCGCGACGATATTGTCGCCGCTGCGATCGCCGCCGAAGACGCTTTTCATGC GACCAGCCTCGGGCTGGCCACGGCGCCCACCATCCGTCGCCTCGCCGATCTGCAACCGCGCACGCTCGCGTTGATGCACG GGCCGACATTTCAGGGCGATGGGGCGCACGCGCTGCGGCGACTGGCGGACTATTTCGAGGAAATGCTGCGTCAGCCGGCA TGA
Upstream 100 bases:
>100_bases GTAGGATCGTTTGGGCCGGTCATTTTGCTCAGGGGGATTTGACATGCTCCGTTTTTAGTTGCACATATGTGTGCAGTCAA TTCCCAGATGGAGCGCCTAT
Downstream 100 bases:
>100_bases CCCTTTCGGCATGACCGGGACGGATGCCGACGCAGGCATTGGCATCGCAACGATGGGGCGACACGAACCCGCTGCGCTGA GTATGGCGCGCCCGGCAGGA
Product: hypothetical protein
Products: NA
Alternate protein names: Beta-Lactamase Domain-Containing Protein; Lactamase B; Flavoprotein; Metallo-Beta-Lactamase Domain Protein
Number of amino acids: Translated: 240; Mature: 239
Protein sequence:
>240_residues MSAQTTEIADGIFRLSVFVPDIEPPAGFTFNSFLILDDEPLLFHAGQRSMFPLFSAAVEALMPLDRLRWLSFGHVEADEC GAMNLWLQAAPHAQVVHGETACSISLNDLADRAPRVVQDGELITAGRRRIRYFDTPHVPHAWESGVIFEETSATLFCGDL FTQFGSREMTRDDIVAAAIAAEDAFHATSLGLATAPTIRRLADLQPRTLALMHGPTFQGDGAHALRRLADYFEEMLRQPA
Sequences:
>Translated_240_residues MSAQTTEIADGIFRLSVFVPDIEPPAGFTFNSFLILDDEPLLFHAGQRSMFPLFSAAVEALMPLDRLRWLSFGHVEADEC GAMNLWLQAAPHAQVVHGETACSISLNDLADRAPRVVQDGELITAGRRRIRYFDTPHVPHAWESGVIFEETSATLFCGDL FTQFGSREMTRDDIVAAAIAAEDAFHATSLGLATAPTIRRLADLQPRTLALMHGPTFQGDGAHALRRLADYFEEMLRQPA >Mature_239_residues SAQTTEIADGIFRLSVFVPDIEPPAGFTFNSFLILDDEPLLFHAGQRSMFPLFSAAVEALMPLDRLRWLSFGHVEADECG AMNLWLQAAPHAQVVHGETACSISLNDLADRAPRVVQDGELITAGRRRIRYFDTPHVPHAWESGVIFEETSATLFCGDLF TQFGSREMTRDDIVAAAIAAEDAFHATSLGLATAPTIRRLADLQPRTLALMHGPTFQGDGAHALRRLADYFEEMLRQPA
Specific function: Unknown
COG id: COG0426
COG function: function code C; Uncharacterized flavoproteins
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 26467; Mature: 26336
Theoretical pI: Translated: 4.73; Mature: 4.73
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 2.9 %Met (Translated Protein) 4.2 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 2.5 %Met (Mature Protein) 3.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSAQTTEIADGIFRLSVFVPDIEPPAGFTFNSFLILDDEPLLFHAGQRSMFPLFSAAVEA CCCCHHHHHHHEEEEEEEECCCCCCCCCCEEEEEEECCCCEEEECCCCCHHHHHHHHHHH LMPLDRLRWLSFGHVEADECGAMNLWLQAAPHAQVVHGETACSISLNDLADRAPRVVQDG HHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCCEEEECCCEEEEEHHHHHHHCCCEECCC ELITAGRRRIRYFDTPHVPHAWESGVIFEETSATLFCGDLFTQFGSREMTRDDIVAAAIA CEEECCCCEEEEECCCCCCCCCCCCEEEECCCCEEEEHHHHHHHCCCCCCHHHHHHHHHH AEDAFHATSLGLATAPTIRRLADLQPRTLALMHGPTFQGDGAHALRRLADYFEEMLRQPA HHHHHHHHHCCCCCCHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure SAQTTEIADGIFRLSVFVPDIEPPAGFTFNSFLILDDEPLLFHAGQRSMFPLFSAAVEA CCCHHHHHHHEEEEEEEECCCCCCCCCCEEEEEEECCCCEEEECCCCCHHHHHHHHHHH LMPLDRLRWLSFGHVEADECGAMNLWLQAAPHAQVVHGETACSISLNDLADRAPRVVQDG HHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCCEEEECCCEEEEEHHHHHHHCCCEECCC ELITAGRRRIRYFDTPHVPHAWESGVIFEETSATLFCGDLFTQFGSREMTRDDIVAAAIA CEEECCCCEEEEECCCCCCCCCCCCEEEECCCCEEEEHHHHHHHCCCCCCHHHHHHHHHH AEDAFHATSLGLATAPTIRRLADLQPRTLALMHGPTFQGDGAHALRRLADYFEEMLRQPA HHHHHHHHHCCCCCCHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA