Definition Sphingopyxis alaskensis RB2256, complete genome.
Accession NC_008048
Length 3,345,170

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The map label for this gene is bfr [H]

Identifier: 103486081

GI number: 103486081

Start: 599209

End: 599691

Strand: Reverse

Name: bfr [H]

Synonym: Sala_0588

Alternate gene names: 103486081

Gene position: 599691-599209 (Counterclockwise)

Preceding gene: 103486085

Following gene: 103486080

Centisome position: 17.93

GC content: 59.42

Gene sequence:

>483_bases
ATGAAGGGCGACGAAAAGGTCATCGACTTCCTCAACGAGGCGCTGAAGAACGAGCTGACCGCGATCAACCAGTATTGGCT
GCATTACCGGATGCTCGACAATTGGGGCGTCGCGCGCCTTGCGCATTTCGAGCGCGAAGAGTCGATCGACGAGATGAAGC
ACGCCGACAAGCTGGCGGACCGCATCCTCTTCCTCGGCGGCCTTCCCAATTTCCAGCTGCTCGGCCGCCTGCGCGTCGGC
GAGACGGTCGAGGAAATATTGAAGGCCGACCTTGCGCTGGAAGAAGAGGCGATCCCGCTGCTCAAGGACGCGATCGCGCA
TTCGGAAAGCGTGCGCGACTATGTGAGCCGCGACCTGTTCGCCGACATCCTCGAAAGCGAGGAGCATCATGTCGACGAGC
TGGAAAAGCAGTTCGAGATGATCGAGCGCATGGGCATCGAAAATTATATCCAGCTCCAGTCGAAGCCGGCCGGGGACGAT
TGA

Upstream 100 bases:

>100_bases
TTTTTCGCAGATTTCTGCCATTTTCACCCTTGGCCTGGCGGGGTCCGGGGCGGTATGATGCCGCCGTTCCCACACAACAG
AAAATGACAGGACTGACATC

Downstream 100 bases:

>100_bases
CGCAATCTTTGCCCTCCCCTTCAGGGGAGGGCAGCGAGACTTGGCAGCTTGCTGCCTAGTCGCAGCGGGTGGGGGCCCGG
CAAGAGCCGGGCCAAGTCTC

Product: bacterioferritin

Products: NA

Alternate protein names: BFR; Cytochrome b-1; Cytochrome b-557 [H]

Number of amino acids: Translated: 160; Mature: 160

Protein sequence:

>160_residues
MKGDEKVIDFLNEALKNELTAINQYWLHYRMLDNWGVARLAHFEREESIDEMKHADKLADRILFLGGLPNFQLLGRLRVG
ETVEEILKADLALEEEAIPLLKDAIAHSESVRDYVSRDLFADILESEEHHVDELEKQFEMIERMGIENYIQLQSKPAGDD

Sequences:

>Translated_160_residues
MKGDEKVIDFLNEALKNELTAINQYWLHYRMLDNWGVARLAHFEREESIDEMKHADKLADRILFLGGLPNFQLLGRLRVG
ETVEEILKADLALEEEAIPLLKDAIAHSESVRDYVSRDLFADILESEEHHVDELEKQFEMIERMGIENYIQLQSKPAGDD
>Mature_160_residues
MKGDEKVIDFLNEALKNELTAINQYWLHYRMLDNWGVARLAHFEREESIDEMKHADKLADRILFLGGLPNFQLLGRLRVG
ETVEEILKADLALEEEAIPLLKDAIAHSESVRDYVSRDLFADILESEEHHVDELEKQFEMIERMGIENYIQLQSKPAGDD

Specific function: May perform analogous functions in iron detoxification and storage to that of animal ferritins [H]

COG id: COG2193

COG function: function code P; Bacterioferritin (cytochrome b1)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ferritin-like diiron domain [H]

Homologues:

Organism=Escherichia coli, GI1789733, Length=158, Percent_Identity=56.3291139240506, Blast_Score=182, Evalue=1e-47,

Paralogues:

None

Copy number: 1639 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002024
- InterPro:   IPR009040
- InterPro:   IPR012347
- InterPro:   IPR009078
- InterPro:   IPR008331 [H]

Pfam domain/function: PF00210 Ferritin [H]

EC number: NA

Molecular weight: Translated: 18566; Mature: 18566

Theoretical pI: Translated: 4.33; Mature: 4.33

Prosite motif: PS50905 FERRITIN_LIKE ; PS00549 BACTERIOFERRITIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKGDEKVIDFLNEALKNELTAINQYWLHYRMLDNWGVARLAHFEREESIDEMKHADKLAD
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH
RILFLGGLPNFQLLGRLRVGETVEEILKADLALEEEAIPLLKDAIAHSESVRDYVSRDLF
HHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ADILESEEHHVDELEKQFEMIERMGIENYIQLQSKPAGDD
HHHHCCCHHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCCC
>Mature Secondary Structure
MKGDEKVIDFLNEALKNELTAINQYWLHYRMLDNWGVARLAHFEREESIDEMKHADKLAD
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH
RILFLGGLPNFQLLGRLRVGETVEEILKADLALEEEAIPLLKDAIAHSESVRDYVSRDLF
HHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ADILESEEHHVDELEKQFEMIERMGIENYIQLQSKPAGDD
HHHHCCCHHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: Fe [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]