| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is 103486085
Identifier: 103486085
GI number: 103486085
Start: 601041
End: 601412
Strand: Reverse
Name: 103486085
Synonym: Sala_0592
Alternate gene names: NA
Gene position: 601412-601041 (Counterclockwise)
Preceding gene: 103486086
Following gene: 103486081
Centisome position: 17.98
GC content: 65.59
Gene sequence:
>372_bases ATGACGCTGATCGAAATTGCCGCCCTGTTCGTCGAACGCAAGAGCTGGATCGTCGCGGCGAGCGACCTCAGCAAGGATGC GCTGCACATCTATTTCGGGCTGGCGTTGTTCCTTGTCGTGCGCCTCGCGTGGCGCGGACGCGGCGGGTGGATTGCCGCAT GGCTCGCGGTGCTGGCGATGGCGGGCGGCGGCGAGGCGCTCGACCTCATAGTCGAATATGGTGGATCGACGGTTCAGCCC GACACCGCGCACTGGCATGACATCTGGAATACGATGTTCTGGCCAACGGTGCTGGCACTCGTCGGACGCTGGCTGCCAGG GACCGATGCGGCGTCAGGCGAGGACGCCGAGCGCCGCCTCGAACAGGCGTAG
Upstream 100 bases:
>100_bases GGTAACCTATGTCGTGGTTGGTGCGTTGAAGCGGCGCGAAGGTGTCGACGTGTTCGACGAAGGCACCGATTTCACGCCCT TTGCCGCCAAGGTCTGACCC
Downstream 100 bases:
>100_bases CCCGTCGGTGCCGCCGTGCGCGCGGTCGATCGCGCGCTCGGGGTGCGGCATCATGCCGAGCACATTGCCCGCATCGTTGA GGACGCCCGCAATGTCACGC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 123; Mature: 122
Protein sequence:
>123_residues MTLIEIAALFVERKSWIVAASDLSKDALHIYFGLALFLVVRLAWRGRGGWIAAWLAVLAMAGGGEALDLIVEYGGSTVQP DTAHWHDIWNTMFWPTVLALVGRWLPGTDAASGEDAERRLEQA
Sequences:
>Translated_123_residues MTLIEIAALFVERKSWIVAASDLSKDALHIYFGLALFLVVRLAWRGRGGWIAAWLAVLAMAGGGEALDLIVEYGGSTVQP DTAHWHDIWNTMFWPTVLALVGRWLPGTDAASGEDAERRLEQA >Mature_122_residues TLIEIAALFVERKSWIVAASDLSKDALHIYFGLALFLVVRLAWRGRGGWIAAWLAVLAMAGGGEALDLIVEYGGSTVQPD TAHWHDIWNTMFWPTVLALVGRWLPGTDAASGEDAERRLEQA
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 13521; Mature: 13389
Theoretical pI: Translated: 4.79; Mature: 4.79
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 2.4 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 1.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTLIEIAALFVERKSWIVAASDLSKDALHIYFGLALFLVVRLAWRGRGGWIAAWLAVLAM CHHHHHHHHHHHHHHHEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH AGGGEALDLIVEYGGSTVQPDTAHWHDIWNTMFWPTVLALVGRWLPGTDAASGEDAERRL CCCCHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHH EQA HCC >Mature Secondary Structure TLIEIAALFVERKSWIVAASDLSKDALHIYFGLALFLVVRLAWRGRGGWIAAWLAVLAM HHHHHHHHHHHHHHHEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH AGGGEALDLIVEYGGSTVQPDTAHWHDIWNTMFWPTVLALVGRWLPGTDAASGEDAERRL CCCCHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHH EQA HCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA