Definition Sphingopyxis alaskensis RB2256, complete genome.
Accession NC_008048
Length 3,345,170

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The map label for this gene is 103485980

Identifier: 103485980

GI number: 103485980

Start: 503214

End: 504284

Strand: Reverse

Name: 103485980

Synonym: Sala_0487

Alternate gene names: NA

Gene position: 504284-503214 (Counterclockwise)

Preceding gene: 103485981

Following gene: 103485979

Centisome position: 15.07

GC content: 71.52

Gene sequence:

>1071_bases
ATGCCGTTGCGTGAAGCCCCTCCGACTCCCCGGCAACTGATAAACGACATCGCGGCGGCGCGGCCGGTGACGGTCGCCGA
CTATATGGCGGCGGCGAACGCACATTATTATGCGACGCGCGACCCGCTCGGCGCCGCGGGTGATTTCACCACCGCGCCCG
AAATCAGCCAGATGTTCGGCGAGATGGTCGGCATCTGGATCGCCGACCTGTGGACGCGCGCGGGGAACCCCGCCTTTCGC
TATGTCGAGCTTGGTCCCGGCCGCGGCACGCTCGCCGCCGACGCGCTGCGCACCATGGCGCGTTTCGGCTGCGAGCCCGT
CGGCATCCACCTCGTCGAAACCAGCCCGGCGCTGCGCGCGGCGCAGCTCGCGCGCCTGCCCGCGGCGCAGCATCATGACG
AGGTCGATGCGCTGCCGGGCGACGCGCCGTTGCTCATCGTCGCCAATGAGTTTTTCGACGCGCTGCCGATCCACCAATAT
GTCCGCACCGCGGACGGCTGGCGCGAACGCATGGTCGGGCGCGCGGGCGACGCGCGAATGGCCGTAGCAGGCGACGTCTC
CGCCGACGAAGCGATCCCCGCCGCGCTGCGCGGCGCGGCCGAGGGCACGATCGTCGAAACCATGCCCGTCGCCGCCGCGA
TCATGCAGCGCTGCGCTTTTCGCCTGTCGCGGCAGGGCGGCGCAATGCTGGCGATCGACTACGGCTACACCGGCCCCGCC
GCGGGCGACACGTTGCAGGCGGTAAAGGCGCACGGTTTTGCCGATCCCTTCGCCGACCCCGGCGAGGCCGACCTCACCGC
GCATGTCGATTTTGCCGCGCTGGCCGATGCCGCGCGGTCGGGCGGCGTCGCCGTCGCCGGCCCCTCGCCGCAGGGGGCCT
GGCTGCGCCGGATGGGCATCGACGCGCGGCTGGCCTCGCTTGTCGCCGCCGCGCCCGCGCGCGCCGACGAATTGCAGGGC
CGGCGCGACCGGCTGGTGAACGCCGACGCGATGGGCGAGCTTTTCAAGGCGATCGCCTTCACCGCGCCGAACTGGCCCAC
GCCCGCTGGTTTCACAGGAGATCCCCTATGA

Upstream 100 bases:

>100_bases
ATGGGGCAGACGCTGACGATCCCGATGCTGCTCGCGGGCATCTGGCTCGTTGCGACCGCGAAGGGGCGCCGCCAGCGGAT
CGAGCCGATCGCCGGACCCG

Downstream 100 bases:

>100_bases
GCGCCATCCAGCTCGCCGAACCCGCCGATGCCGAAGCGATCAGCGCCTTTGCCGAGGCGTCGTTCAAAGACACCTTCGCG
CATCTTTACGATCCCGCCGA

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 356; Mature: 355

Protein sequence:

>356_residues
MPLREAPPTPRQLINDIAAARPVTVADYMAAANAHYYATRDPLGAAGDFTTAPEISQMFGEMVGIWIADLWTRAGNPAFR
YVELGPGRGTLAADALRTMARFGCEPVGIHLVETSPALRAAQLARLPAAQHHDEVDALPGDAPLLIVANEFFDALPIHQY
VRTADGWRERMVGRAGDARMAVAGDVSADEAIPAALRGAAEGTIVETMPVAAAIMQRCAFRLSRQGGAMLAIDYGYTGPA
AGDTLQAVKAHGFADPFADPGEADLTAHVDFAALADAARSGGVAVAGPSPQGAWLRRMGIDARLASLVAAAPARADELQG
RRDRLVNADAMGELFKAIAFTAPNWPTPAGFTGDPL

Sequences:

>Translated_356_residues
MPLREAPPTPRQLINDIAAARPVTVADYMAAANAHYYATRDPLGAAGDFTTAPEISQMFGEMVGIWIADLWTRAGNPAFR
YVELGPGRGTLAADALRTMARFGCEPVGIHLVETSPALRAAQLARLPAAQHHDEVDALPGDAPLLIVANEFFDALPIHQY
VRTADGWRERMVGRAGDARMAVAGDVSADEAIPAALRGAAEGTIVETMPVAAAIMQRCAFRLSRQGGAMLAIDYGYTGPA
AGDTLQAVKAHGFADPFADPGEADLTAHVDFAALADAARSGGVAVAGPSPQGAWLRRMGIDARLASLVAAAPARADELQG
RRDRLVNADAMGELFKAIAFTAPNWPTPAGFTGDPL
>Mature_355_residues
PLREAPPTPRQLINDIAAARPVTVADYMAAANAHYYATRDPLGAAGDFTTAPEISQMFGEMVGIWIADLWTRAGNPAFRY
VELGPGRGTLAADALRTMARFGCEPVGIHLVETSPALRAAQLARLPAAQHHDEVDALPGDAPLLIVANEFFDALPIHQYV
RTADGWRERMVGRAGDARMAVAGDVSADEAIPAALRGAAEGTIVETMPVAAAIMQRCAFRLSRQGGAMLAIDYGYTGPAA
GDTLQAVKAHGFADPFADPGEADLTAHVDFAALADAARSGGVAVAGPSPQGAWLRRMGIDARLASLVAAAPARADELQGR
RDRLVNADAMGELFKAIAFTAPNWPTPAGFTGDPL

Specific function: Unknown

COG id: COG1565

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Homo sapiens, GI21396487, Length=379, Percent_Identity=36.4116094986807, Blast_Score=200, Evalue=2e-51,
Organism=Homo sapiens, GI145701028, Length=346, Percent_Identity=30.0578034682081, Blast_Score=116, Evalue=3e-26,
Organism=Caenorhabditis elegans, GI193211224, Length=382, Percent_Identity=30.3664921465969, Blast_Score=187, Evalue=8e-48,
Organism=Drosophila melanogaster, GI24645885, Length=367, Percent_Identity=34.6049046321526, Blast_Score=195, Evalue=5e-50,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 37342; Mature: 37210

Theoretical pI: Translated: 4.93; Mature: 4.93

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPLREAPPTPRQLINDIAAARPVTVADYMAAANAHYYATRDPLGAAGDFTTAPEISQMFG
CCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHCCCCEEECCCCCCCCCCCCCCHHHHHHHH
EMVGIWIADLWTRAGNPAFRYVELGPGRGTLAADALRTMARFGCEPVGIHLVETSPALRA
HHHHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHHHCCCEEEEEEEECCCHHHH
AQLARLPAAQHHDEVDALPGDAPLLIVANEFFDALPIHQYVRTADGWRERMVGRAGDARM
HHHHHCCCHHCCCHHHCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCE
AVAGDVSADEAIPAALRGAAEGTIVETMPVAAAIMQRCAFRLSRQGGAMLAIDYGYTGPA
EEECCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCC
AGDTLQAVKAHGFADPFADPGEADLTAHVDFAALADAARSGGVAVAGPSPQGAWLRRMGI
CCHHHHHHHHCCCCCCCCCCCCCCEEEECHHHHHHHHHHCCCEEEECCCCCCHHHHHHCC
DARLASLVAAAPARADELQGRRDRLVNADAMGELFKAIAFTAPNWPTPAGFTGDPL
HHHHHHHHHHCCCCHHHHCCHHHHHCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
PLREAPPTPRQLINDIAAARPVTVADYMAAANAHYYATRDPLGAAGDFTTAPEISQMFG
CCCCCCCCHHHHHHHHHHCCCCHHHHHHHHCCCCEEECCCCCCCCCCCCCCHHHHHHHH
EMVGIWIADLWTRAGNPAFRYVELGPGRGTLAADALRTMARFGCEPVGIHLVETSPALRA
HHHHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHHHCCCEEEEEEEECCCHHHH
AQLARLPAAQHHDEVDALPGDAPLLIVANEFFDALPIHQYVRTADGWRERMVGRAGDARM
HHHHHCCCHHCCCHHHCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCE
AVAGDVSADEAIPAALRGAAEGTIVETMPVAAAIMQRCAFRLSRQGGAMLAIDYGYTGPA
EEECCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCC
AGDTLQAVKAHGFADPFADPGEADLTAHVDFAALADAARSGGVAVAGPSPQGAWLRRMGI
CCHHHHHHHHCCCCCCCCCCCCCCEEEECHHHHHHHHHHCCCEEEECCCCCCHHHHHHCC
DARLASLVAAAPARADELQGRRDRLVNADAMGELFKAIAFTAPNWPTPAGFTGDPL
HHHHHHHHHHCCCCHHHHCCHHHHHCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA