| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is 103485980
Identifier: 103485980
GI number: 103485980
Start: 503214
End: 504284
Strand: Reverse
Name: 103485980
Synonym: Sala_0487
Alternate gene names: NA
Gene position: 504284-503214 (Counterclockwise)
Preceding gene: 103485981
Following gene: 103485979
Centisome position: 15.07
GC content: 71.52
Gene sequence:
>1071_bases ATGCCGTTGCGTGAAGCCCCTCCGACTCCCCGGCAACTGATAAACGACATCGCGGCGGCGCGGCCGGTGACGGTCGCCGA CTATATGGCGGCGGCGAACGCACATTATTATGCGACGCGCGACCCGCTCGGCGCCGCGGGTGATTTCACCACCGCGCCCG AAATCAGCCAGATGTTCGGCGAGATGGTCGGCATCTGGATCGCCGACCTGTGGACGCGCGCGGGGAACCCCGCCTTTCGC TATGTCGAGCTTGGTCCCGGCCGCGGCACGCTCGCCGCCGACGCGCTGCGCACCATGGCGCGTTTCGGCTGCGAGCCCGT CGGCATCCACCTCGTCGAAACCAGCCCGGCGCTGCGCGCGGCGCAGCTCGCGCGCCTGCCCGCGGCGCAGCATCATGACG AGGTCGATGCGCTGCCGGGCGACGCGCCGTTGCTCATCGTCGCCAATGAGTTTTTCGACGCGCTGCCGATCCACCAATAT GTCCGCACCGCGGACGGCTGGCGCGAACGCATGGTCGGGCGCGCGGGCGACGCGCGAATGGCCGTAGCAGGCGACGTCTC CGCCGACGAAGCGATCCCCGCCGCGCTGCGCGGCGCGGCCGAGGGCACGATCGTCGAAACCATGCCCGTCGCCGCCGCGA TCATGCAGCGCTGCGCTTTTCGCCTGTCGCGGCAGGGCGGCGCAATGCTGGCGATCGACTACGGCTACACCGGCCCCGCC GCGGGCGACACGTTGCAGGCGGTAAAGGCGCACGGTTTTGCCGATCCCTTCGCCGACCCCGGCGAGGCCGACCTCACCGC GCATGTCGATTTTGCCGCGCTGGCCGATGCCGCGCGGTCGGGCGGCGTCGCCGTCGCCGGCCCCTCGCCGCAGGGGGCCT GGCTGCGCCGGATGGGCATCGACGCGCGGCTGGCCTCGCTTGTCGCCGCCGCGCCCGCGCGCGCCGACGAATTGCAGGGC CGGCGCGACCGGCTGGTGAACGCCGACGCGATGGGCGAGCTTTTCAAGGCGATCGCCTTCACCGCGCCGAACTGGCCCAC GCCCGCTGGTTTCACAGGAGATCCCCTATGA
Upstream 100 bases:
>100_bases ATGGGGCAGACGCTGACGATCCCGATGCTGCTCGCGGGCATCTGGCTCGTTGCGACCGCGAAGGGGCGCCGCCAGCGGAT CGAGCCGATCGCCGGACCCG
Downstream 100 bases:
>100_bases GCGCCATCCAGCTCGCCGAACCCGCCGATGCCGAAGCGATCAGCGCCTTTGCCGAGGCGTCGTTCAAAGACACCTTCGCG CATCTTTACGATCCCGCCGA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 356; Mature: 355
Protein sequence:
>356_residues MPLREAPPTPRQLINDIAAARPVTVADYMAAANAHYYATRDPLGAAGDFTTAPEISQMFGEMVGIWIADLWTRAGNPAFR YVELGPGRGTLAADALRTMARFGCEPVGIHLVETSPALRAAQLARLPAAQHHDEVDALPGDAPLLIVANEFFDALPIHQY VRTADGWRERMVGRAGDARMAVAGDVSADEAIPAALRGAAEGTIVETMPVAAAIMQRCAFRLSRQGGAMLAIDYGYTGPA AGDTLQAVKAHGFADPFADPGEADLTAHVDFAALADAARSGGVAVAGPSPQGAWLRRMGIDARLASLVAAAPARADELQG RRDRLVNADAMGELFKAIAFTAPNWPTPAGFTGDPL
Sequences:
>Translated_356_residues MPLREAPPTPRQLINDIAAARPVTVADYMAAANAHYYATRDPLGAAGDFTTAPEISQMFGEMVGIWIADLWTRAGNPAFR YVELGPGRGTLAADALRTMARFGCEPVGIHLVETSPALRAAQLARLPAAQHHDEVDALPGDAPLLIVANEFFDALPIHQY VRTADGWRERMVGRAGDARMAVAGDVSADEAIPAALRGAAEGTIVETMPVAAAIMQRCAFRLSRQGGAMLAIDYGYTGPA AGDTLQAVKAHGFADPFADPGEADLTAHVDFAALADAARSGGVAVAGPSPQGAWLRRMGIDARLASLVAAAPARADELQG RRDRLVNADAMGELFKAIAFTAPNWPTPAGFTGDPL >Mature_355_residues PLREAPPTPRQLINDIAAARPVTVADYMAAANAHYYATRDPLGAAGDFTTAPEISQMFGEMVGIWIADLWTRAGNPAFRY VELGPGRGTLAADALRTMARFGCEPVGIHLVETSPALRAAQLARLPAAQHHDEVDALPGDAPLLIVANEFFDALPIHQYV RTADGWRERMVGRAGDARMAVAGDVSADEAIPAALRGAAEGTIVETMPVAAAIMQRCAFRLSRQGGAMLAIDYGYTGPAA GDTLQAVKAHGFADPFADPGEADLTAHVDFAALADAARSGGVAVAGPSPQGAWLRRMGIDARLASLVAAAPARADELQGR RDRLVNADAMGELFKAIAFTAPNWPTPAGFTGDPL
Specific function: Unknown
COG id: COG1565
COG function: function code S; Uncharacterized conserved protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Homo sapiens, GI21396487, Length=379, Percent_Identity=36.4116094986807, Blast_Score=200, Evalue=2e-51, Organism=Homo sapiens, GI145701028, Length=346, Percent_Identity=30.0578034682081, Blast_Score=116, Evalue=3e-26, Organism=Caenorhabditis elegans, GI193211224, Length=382, Percent_Identity=30.3664921465969, Blast_Score=187, Evalue=8e-48, Organism=Drosophila melanogaster, GI24645885, Length=367, Percent_Identity=34.6049046321526, Blast_Score=195, Evalue=5e-50,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 37342; Mature: 37210
Theoretical pI: Translated: 4.93; Mature: 4.93
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 3.4 %Met (Translated Protein) 3.9 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 3.1 %Met (Mature Protein) 3.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPLREAPPTPRQLINDIAAARPVTVADYMAAANAHYYATRDPLGAAGDFTTAPEISQMFG CCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHCCCCEEECCCCCCCCCCCCCCHHHHHHHH EMVGIWIADLWTRAGNPAFRYVELGPGRGTLAADALRTMARFGCEPVGIHLVETSPALRA HHHHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHHHCCCEEEEEEEECCCHHHH AQLARLPAAQHHDEVDALPGDAPLLIVANEFFDALPIHQYVRTADGWRERMVGRAGDARM HHHHHCCCHHCCCHHHCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCE AVAGDVSADEAIPAALRGAAEGTIVETMPVAAAIMQRCAFRLSRQGGAMLAIDYGYTGPA EEECCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCC AGDTLQAVKAHGFADPFADPGEADLTAHVDFAALADAARSGGVAVAGPSPQGAWLRRMGI CCHHHHHHHHCCCCCCCCCCCCCCEEEECHHHHHHHHHHCCCEEEECCCCCCHHHHHHCC DARLASLVAAAPARADELQGRRDRLVNADAMGELFKAIAFTAPNWPTPAGFTGDPL HHHHHHHHHHCCCCHHHHCCHHHHHCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCC >Mature Secondary Structure PLREAPPTPRQLINDIAAARPVTVADYMAAANAHYYATRDPLGAAGDFTTAPEISQMFG CCCCCCCCHHHHHHHHHHCCCCHHHHHHHHCCCCEEECCCCCCCCCCCCCCHHHHHHHH EMVGIWIADLWTRAGNPAFRYVELGPGRGTLAADALRTMARFGCEPVGIHLVETSPALRA HHHHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHHHCCCEEEEEEEECCCHHHH AQLARLPAAQHHDEVDALPGDAPLLIVANEFFDALPIHQYVRTADGWRERMVGRAGDARM HHHHHCCCHHCCCHHHCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCE AVAGDVSADEAIPAALRGAAEGTIVETMPVAAAIMQRCAFRLSRQGGAMLAIDYGYTGPA EEECCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCC AGDTLQAVKAHGFADPFADPGEADLTAHVDFAALADAARSGGVAVAGPSPQGAWLRRMGI CCHHHHHHHHCCCCCCCCCCCCCCEEEECHHHHHHHHHHCCCEEEECCCCCCHHHHHHCC DARLASLVAAAPARADELQGRRDRLVNADAMGELFKAIAFTAPNWPTPAGFTGDPL HHHHHHHHHHCCCCHHHHCCHHHHHCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA