Definition Sphingopyxis alaskensis RB2256, complete genome.
Accession NC_008048
Length 3,345,170

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The map label for this gene is 103485934

Identifier: 103485934

GI number: 103485934

Start: 450421

End: 452895

Strand: Reverse

Name: 103485934

Synonym: Sala_0441

Alternate gene names: NA

Gene position: 452895-450421 (Counterclockwise)

Preceding gene: 103485935

Following gene: 103485930

Centisome position: 13.54

GC content: 64.61

Gene sequence:

>2475_bases
ATGTCCAATTCTTCCCTCGCTTTTGCATTCGATGAACCATCACCGCCCGCTGTTGCGACGGCGGCCCAGGTCATGGCTTC
AGAGCTCGCAGCAGGCCGCGCGCTGTCACGCAGCGACGTGACGCGTATCATGAGCGAGCACTTCGGGGGCAGCGATGCTC
TCGGGCGTTGGTCGGTGCGTGACGCCCACGCAGCTCTAGAGCTGGCACAGGTTCAATACCTGCAAGCGTGCGATCAGATC
CAGCTCTCGAGCCCGATCGACGAGGCGGAACAGTTCTTCTTCTCCCTCGATGACCGAATTCCGACCCAGACCAATCGCAG
CGACGAGCAGATCGAATGGCAACAATTCGCAACGCCGCCGCGCCTTGCTTGGCTCGCTGCCCGGGCTTGCGCGCTGGTCG
CCGACGAACTCGTGCTCGAACCCTCGGCCGGTACCGGTATGCTCGCAGTCTGGGCGACCAAAGCCGGCACGCACCTTGCC
TTGAACGAAATCTCGCCGCTGCGCCGCGACTGCCTGACTGCTGTGTTCCCGGCTGCCCACGTGACCGGACATGATGCCGA
GCTGATCGACGAATTGCTCGATCCGGCCATCGCACCGAGCGTCGTGCTGATGAACCCGCCGTATTCTCATGGGATCGAGC
GGGGCCACGATGGCCGCACCGGAGCGAGGCATCTGCGCTCGGCCTGGAACCGGCTTGCCCCCGGCGGGCGGCTGGTCGCG
ATCATGCCTGAATGGTTCGATTGCGCGCGGTTTCTGGCCCGGGCGAAGGGGCCAGTGTCGATGCGGCTCAATGCCGCGGT
CGAACGTGCCTTCATCAAGAACGGCACCGGGATCACCACGCGGCTGCTGGTTCTCGATAAGGTGGAAGGCGTCAACGAGC
CCGTCGCAATTCGCACGAACGAGTTCCGCCAGCTGGTCGATCTTGTCGATGCCTTGCCTGCTCGCGCCAGCAGGCAGGCT
ATCGCTGAACAATCGACTCTTCCGGCTCGTGCGCCGTTCCGTCTGCTAACCGCGCCACGCAGACCACCCCCGGCCCCGTC
AACGACCACGCGAGCCGCGTCGATGACCATCGGCGCATTGACCTACGAGGCGCTTGAAAAACCTGCGCCGCTTGGAGCCC
AGGTCGGCCACTATCTGCCCTATCGCCCAAGCAGGATCGTGATCAATGGCGCGGCCGGGCATCCAACGCCGCTCGTCGAG
TCCGTCGCCATGGGGTCGATTTCGGCACCCAAGCCGGACGCGGTGCCGCAGCTGCCTGACGGGCTTATCGTCAAGGGACT
GCTGTCTGCTGCCCAGGCAGAGACCCTGATCTACGCCGCCAGCGCTCACGCCCGCGATTTGCATGGCCGGTTCGAGCCCG
AGGACAAGGGCTGTTCGCTCAAGGCCTCGGCAGAAGGTCAGGTCTACCGGCAGGGCTATTTCCTCGGGGACGGAACGGGT
GCCGGGAAGGGCCGTCAGGTTGCGAGCGTCATTCTCGACCGCTGGGTGCGCGGGGAACGCCGCCATATCTGGATTTCGAA
GAACGAGGCGTTGCTCGAAGATGCCCGGCGCGACTGGGCTGCGCTTGGGGGCCTCCCGATCGACATCCAAGCTCTAGCGT
CCTGGAAACTCGGCACCCCCATCGCCATGCGCGACGGGATCCTCTTCGTCACCTATCCGACCCTTCGGTCTGGGCGGAGC
GATGCAACACGTCTCGACCAAATCCTCGCCTGGGCCGGTGAGGAGTTCAACGGCGTGATCGTGTTCGACGAAGCGCACGC
CATGGCCAATGCTGCCGGCGGTGAAGGATCGCGGGGCAAGGTCAAGGGATCGGAGCAGGGCATTGCCGGTGTGCGCCTGC
AGAACCTCCTGCCCCGGGCGAGGGTACTCTACGCTTCGGCAACCGGTGCATCAGACGTCAACAACCTGGCCTATGCGACG
CGCCTCGGGCTCTGGGGTCCGGAGACCGCCTTCGCCAATCGCGAGGCCTTCGTTACCGACATTCGCGACGGCGGCATCGC
CGCGATGGAACTCGTCGCGCGGGACCTCAAGTCGCTCGGCCTCTACACCGCCCGGGCCCTTTCGTTCGCTGGTGTCGAAT
ACGAGATCCTCGAGCATTGCCTGACCGAGGATCAGATCTCGGTCTACGATGCCTATGCCGAGGCCTGGGCGATCATTCAC
GCCAACCTGCGCGAAGCGCTCGAGGCCACACGGATCGTTGACAGCGAGACCGGGGGCACGCTCAACTCGGGTGCCAAGTC
GGCAGCGCTGTCGATCTTCGAGGGAACGAAGCAGCGCTTCTTCGCGCAGCTGCTTCTGTCTATGAAGCTCCCCAGCTTGC
TGCCCGCGATCGATACGGCGATTGCCGATGGTCACGCTGTGGTCGTCCAGCTGGTCTCGACGGCAGAAGCCATGCTCGAC
CGGCGGCTTGCCGACCTCTCCGACGAGGAGCGCGAAGCGCTGGAGATCGACCTGTCCCCGCGGGAATACATCTAA

Upstream 100 bases:

>100_bases
AAGTCCCGGCTTGCCCGTAAACCTGACCCGTTGGGCAGAGGGGAGGGGGCCTTCGGCTGATTGAGGCCTGCCCGGCGCAG
GACCTCGTCAGGAGGTTCCC

Downstream 100 bases:

>100_bases
TGTGGAGCTCCACATTACACATATTCTTTGCAGTCGCAGTTTATGTCGAGCGTGGCGGCGAGAGACGCAGGTTTCCTTCG
GTTTTCCATGATTTCACTCC

Product: putative methylase/helicase

Products: NA

Alternate protein names: Probably Methylase/Helicase

Number of amino acids: Translated: 824; Mature: 823

Protein sequence:

>824_residues
MSNSSLAFAFDEPSPPAVATAAQVMASELAAGRALSRSDVTRIMSEHFGGSDALGRWSVRDAHAALELAQVQYLQACDQI
QLSSPIDEAEQFFFSLDDRIPTQTNRSDEQIEWQQFATPPRLAWLAARACALVADELVLEPSAGTGMLAVWATKAGTHLA
LNEISPLRRDCLTAVFPAAHVTGHDAELIDELLDPAIAPSVVLMNPPYSHGIERGHDGRTGARHLRSAWNRLAPGGRLVA
IMPEWFDCARFLARAKGPVSMRLNAAVERAFIKNGTGITTRLLVLDKVEGVNEPVAIRTNEFRQLVDLVDALPARASRQA
IAEQSTLPARAPFRLLTAPRRPPPAPSTTTRAASMTIGALTYEALEKPAPLGAQVGHYLPYRPSRIVINGAAGHPTPLVE
SVAMGSISAPKPDAVPQLPDGLIVKGLLSAAQAETLIYAASAHARDLHGRFEPEDKGCSLKASAEGQVYRQGYFLGDGTG
AGKGRQVASVILDRWVRGERRHIWISKNEALLEDARRDWAALGGLPIDIQALASWKLGTPIAMRDGILFVTYPTLRSGRS
DATRLDQILAWAGEEFNGVIVFDEAHAMANAAGGEGSRGKVKGSEQGIAGVRLQNLLPRARVLYASATGASDVNNLAYAT
RLGLWGPETAFANREAFVTDIRDGGIAAMELVARDLKSLGLYTARALSFAGVEYEILEHCLTEDQISVYDAYAEAWAIIH
ANLREALEATRIVDSETGGTLNSGAKSAALSIFEGTKQRFFAQLLLSMKLPSLLPAIDTAIADGHAVVVQLVSTAEAMLD
RRLADLSDEEREALEIDLSPREYI

Sequences:

>Translated_824_residues
MSNSSLAFAFDEPSPPAVATAAQVMASELAAGRALSRSDVTRIMSEHFGGSDALGRWSVRDAHAALELAQVQYLQACDQI
QLSSPIDEAEQFFFSLDDRIPTQTNRSDEQIEWQQFATPPRLAWLAARACALVADELVLEPSAGTGMLAVWATKAGTHLA
LNEISPLRRDCLTAVFPAAHVTGHDAELIDELLDPAIAPSVVLMNPPYSHGIERGHDGRTGARHLRSAWNRLAPGGRLVA
IMPEWFDCARFLARAKGPVSMRLNAAVERAFIKNGTGITTRLLVLDKVEGVNEPVAIRTNEFRQLVDLVDALPARASRQA
IAEQSTLPARAPFRLLTAPRRPPPAPSTTTRAASMTIGALTYEALEKPAPLGAQVGHYLPYRPSRIVINGAAGHPTPLVE
SVAMGSISAPKPDAVPQLPDGLIVKGLLSAAQAETLIYAASAHARDLHGRFEPEDKGCSLKASAEGQVYRQGYFLGDGTG
AGKGRQVASVILDRWVRGERRHIWISKNEALLEDARRDWAALGGLPIDIQALASWKLGTPIAMRDGILFVTYPTLRSGRS
DATRLDQILAWAGEEFNGVIVFDEAHAMANAAGGEGSRGKVKGSEQGIAGVRLQNLLPRARVLYASATGASDVNNLAYAT
RLGLWGPETAFANREAFVTDIRDGGIAAMELVARDLKSLGLYTARALSFAGVEYEILEHCLTEDQISVYDAYAEAWAIIH
ANLREALEATRIVDSETGGTLNSGAKSAALSIFEGTKQRFFAQLLLSMKLPSLLPAIDTAIADGHAVVVQLVSTAEAMLD
RRLADLSDEEREALEIDLSPREYI
>Mature_823_residues
SNSSLAFAFDEPSPPAVATAAQVMASELAAGRALSRSDVTRIMSEHFGGSDALGRWSVRDAHAALELAQVQYLQACDQIQ
LSSPIDEAEQFFFSLDDRIPTQTNRSDEQIEWQQFATPPRLAWLAARACALVADELVLEPSAGTGMLAVWATKAGTHLAL
NEISPLRRDCLTAVFPAAHVTGHDAELIDELLDPAIAPSVVLMNPPYSHGIERGHDGRTGARHLRSAWNRLAPGGRLVAI
MPEWFDCARFLARAKGPVSMRLNAAVERAFIKNGTGITTRLLVLDKVEGVNEPVAIRTNEFRQLVDLVDALPARASRQAI
AEQSTLPARAPFRLLTAPRRPPPAPSTTTRAASMTIGALTYEALEKPAPLGAQVGHYLPYRPSRIVINGAAGHPTPLVES
VAMGSISAPKPDAVPQLPDGLIVKGLLSAAQAETLIYAASAHARDLHGRFEPEDKGCSLKASAEGQVYRQGYFLGDGTGA
GKGRQVASVILDRWVRGERRHIWISKNEALLEDARRDWAALGGLPIDIQALASWKLGTPIAMRDGILFVTYPTLRSGRSD
ATRLDQILAWAGEEFNGVIVFDEAHAMANAAGGEGSRGKVKGSEQGIAGVRLQNLLPRARVLYASATGASDVNNLAYATR
LGLWGPETAFANREAFVTDIRDGGIAAMELVARDLKSLGLYTARALSFAGVEYEILEHCLTEDQISVYDAYAEAWAIIHA
NLREALEATRIVDSETGGTLNSGAKSAALSIFEGTKQRFFAQLLLSMKLPSLLPAIDTAIADGHAVVVQLVSTAEAMLDR
RLADLSDEEREALEIDLSPREYI

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Homo sapiens, GI269846807, Length=435, Percent_Identity=34.0229885057471, Blast_Score=238, Evalue=2e-62,
Organism=Homo sapiens, GI269846812, Length=435, Percent_Identity=34.0229885057471, Blast_Score=238, Evalue=2e-62,
Organism=Homo sapiens, GI154355002, Length=430, Percent_Identity=36.9767441860465, Blast_Score=220, Evalue=5e-57,
Organism=Homo sapiens, GI154355004, Length=430, Percent_Identity=36.9767441860465, Blast_Score=219, Evalue=7e-57,
Organism=Caenorhabditis elegans, GI17553078, Length=449, Percent_Identity=32.739420935412, Blast_Score=229, Evalue=3e-60,
Organism=Drosophila melanogaster, GI161077796, Length=445, Percent_Identity=34.1573033707865, Blast_Score=237, Evalue=3e-62,
Organism=Drosophila melanogaster, GI24641704, Length=445, Percent_Identity=34.1573033707865, Blast_Score=237, Evalue=3e-62,
Organism=Drosophila melanogaster, GI161077794, Length=445, Percent_Identity=34.1573033707865, Blast_Score=236, Evalue=3e-62,
Organism=Drosophila melanogaster, GI19921354, Length=432, Percent_Identity=34.2592592592593, Blast_Score=226, Evalue=5e-59,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 88699; Mature: 88567

Theoretical pI: Translated: 5.66; Mature: 5.66

Prosite motif: PS00092 N6_MTASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSNSSLAFAFDEPSPPAVATAAQVMASELAAGRALSRSDVTRIMSEHFGGSDALGRWSVR
CCCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCCH
DAHAALELAQVQYLQACDQIQLSSPIDEAEQFFFSLDDRIPTQTNRSDEQIEWQQFATPP
HHHHHHHHHHHHHHHHHCCEECCCCHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHCCCH
RLAWLAARACALVADELVLEPSAGTGMLAVWATKAGTHLALNEISPLRRDCLTAVFPAAH
HHHHHHHHHHHHHHHHHEECCCCCCCEEEEEEECCCCEEEHHHCCHHHHHHHHHHHCHHH
VTGHDAELIDELLDPAIAPSVVLMNPPYSHGIERGHDGRTGARHLRSAWNRLAPGGRLVA
CCCCCHHHHHHHHCHHHCCEEEEECCCHHHCCCCCCCCCHHHHHHHHHHHHCCCCCEEEE
IMPEWFDCARFLARAKGPVSMRLNAAVERAFIKNGTGITTRLLVLDKVEGVNEPVAIRTN
ECCCHHHHHHHHHHCCCCCEEEHHHHHHHHHHCCCCCCEEEEEEEHHHCCCCCCEEEEHH
EFRQLVDLVDALPARASRQAIAEQSTLPARAPFRLLTAPRRPPPAPSTTTRAASMTIGAL
HHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCHHHCCCCCCCCCCCCCCHHHHHHHHHH
TYEALEKPAPLGAQVGHYLPYRPSRIVINGAAGHPTPLVESVAMGSISAPKPDAVPQLPD
HHHHHHCCCCCCHHHCCCCCCCCCEEEEECCCCCCCHHHHHHHCCCCCCCCCCCCCCCCC
GLIVKGLLSAAQAETLIYAASAHARDLHGRFEPEDKGCSLKASAEGQVYRQGYFLGDGTG
HHHHHHHHHHHHHHHEEEEECCCHHHCCCCCCCCCCCCEEEECCCCCEEECEEEEECCCC
AGKGRQVASVILDRWVRGERRHIWISKNEALLEDARRDWAALGGLPIDIQALASWKLGTP
CCCHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHHCCCCEEHHHHHCCCCCCC
IAMRDGILFVTYPTLRSGRSDATRLDQILAWAGEEFNGVIVFDEAHAMANAAGGEGSRGK
EEECCCEEEEEECCCCCCCCHHHHHHHHHHHCCCCCCCEEEEECHHHHHHCCCCCCCCCC
VKGSEQGIAGVRLQNLLPRARVLYASATGASDVNNLAYATRLGLWGPETAFANREAFVTD
CCCCCCCCCHHHHHHHCCCHHEEEEECCCCCHHHHHHHHHHHCCCCCCHHHCCCCCEEEE
IRDGGIAAMELVARDLKSLGLYTARALSFAGVEYEILEHCLTEDQISVYDAYAEAWAIIH
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHH
ANLREALEATRIVDSETGGTLNSGAKSAALSIFEGTKQRFFAQLLLSMKLPSLLPAIDTA
HHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
IADGHAVVVQLVSTAEAMLDRRLADLSDEEREALEIDLSPREYI
HCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCC
>Mature Secondary Structure 
SNSSLAFAFDEPSPPAVATAAQVMASELAAGRALSRSDVTRIMSEHFGGSDALGRWSVR
CCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCCH
DAHAALELAQVQYLQACDQIQLSSPIDEAEQFFFSLDDRIPTQTNRSDEQIEWQQFATPP
HHHHHHHHHHHHHHHHHCCEECCCCHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHCCCH
RLAWLAARACALVADELVLEPSAGTGMLAVWATKAGTHLALNEISPLRRDCLTAVFPAAH
HHHHHHHHHHHHHHHHHEECCCCCCCEEEEEEECCCCEEEHHHCCHHHHHHHHHHHCHHH
VTGHDAELIDELLDPAIAPSVVLMNPPYSHGIERGHDGRTGARHLRSAWNRLAPGGRLVA
CCCCCHHHHHHHHCHHHCCEEEEECCCHHHCCCCCCCCCHHHHHHHHHHHHCCCCCEEEE
IMPEWFDCARFLARAKGPVSMRLNAAVERAFIKNGTGITTRLLVLDKVEGVNEPVAIRTN
ECCCHHHHHHHHHHCCCCCEEEHHHHHHHHHHCCCCCCEEEEEEEHHHCCCCCCEEEEHH
EFRQLVDLVDALPARASRQAIAEQSTLPARAPFRLLTAPRRPPPAPSTTTRAASMTIGAL
HHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCHHHCCCCCCCCCCCCCCHHHHHHHHHH
TYEALEKPAPLGAQVGHYLPYRPSRIVINGAAGHPTPLVESVAMGSISAPKPDAVPQLPD
HHHHHHCCCCCCHHHCCCCCCCCCEEEEECCCCCCCHHHHHHHCCCCCCCCCCCCCCCCC
GLIVKGLLSAAQAETLIYAASAHARDLHGRFEPEDKGCSLKASAEGQVYRQGYFLGDGTG
HHHHHHHHHHHHHHHEEEEECCCHHHCCCCCCCCCCCCEEEECCCCCEEECEEEEECCCC
AGKGRQVASVILDRWVRGERRHIWISKNEALLEDARRDWAALGGLPIDIQALASWKLGTP
CCCHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHHCCCCEEHHHHHCCCCCCC
IAMRDGILFVTYPTLRSGRSDATRLDQILAWAGEEFNGVIVFDEAHAMANAAGGEGSRGK
EEECCCEEEEEECCCCCCCCHHHHHHHHHHHCCCCCCCEEEEECHHHHHHCCCCCCCCCC
VKGSEQGIAGVRLQNLLPRARVLYASATGASDVNNLAYATRLGLWGPETAFANREAFVTD
CCCCCCCCCHHHHHHHCCCHHEEEEECCCCCHHHHHHHHHHHCCCCCCHHHCCCCCEEEE
IRDGGIAAMELVARDLKSLGLYTARALSFAGVEYEILEHCLTEDQISVYDAYAEAWAIIH
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHH
ANLREALEATRIVDSETGGTLNSGAKSAALSIFEGTKQRFFAQLLLSMKLPSLLPAIDTA
HHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
IADGHAVVVQLVSTAEAMLDRRLADLSDEEREALEIDLSPREYI
HCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA