Definition Sphingopyxis alaskensis RB2256, complete genome.
Accession NC_008048
Length 3,345,170

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The map label for this gene is 103485929

Identifier: 103485929

GI number: 103485929

Start: 444457

End: 444870

Strand: Reverse

Name: 103485929

Synonym: Sala_0436

Alternate gene names: NA

Gene position: 444870-444457 (Counterclockwise)

Preceding gene: 103485930

Following gene: 103485928

Centisome position: 13.3

GC content: 62.56

Gene sequence:

>414_bases
ATGCTGGCTCTGCAACCCGTTGATACTGCCGTTACCGCCTTCCGTCCCGATCCGATTACCCAGGATGAGGCAGCTGCCAT
GTTCCGGGCAGTCCTCAATCTGTTCGGCAAATGGGAACTGACCGACGAGCAGGCGGCAACCCTGCTCGACATGCCGGTTC
GATCCTATCGGCGCTGGAAGGCAGAAGGCCCGGGGCGCATCTCGCGTGATGCGCGCGCGCGTCTTTCCAACCTCATGGGG
ATCCACAAGGCGCTTCGCATCATCTTCTCGGAGGCGACCCGCGGGTACACTTGGATCAAGGCAGCGAATGAAGCGTTTGG
CGGAGCCAGTGCGCTCGAAGTGATGCTGGGAGGCGAGCTTACCGACATCATGCGGGTGCGTCGCTACCTCGACGCCGAGC
GCGGTGGCTGGTGA

Upstream 100 bases:

>100_bases
CGAGGGCGCGGCGAGTGTGATTGCCAGACTGGCATGATCGGCAGGGGTTCCTTGCCAAATGGCATTATTTGCCATATATG
ATGCCATATGGAGAACTGCC

Downstream 100 bases:

>100_bases
GCGAAACAGCAGAAATCCCCGTTTCTAGAGTTGAGTGGAAGGGCGCTGTCAGGATCATCCGCAGCGCCTTTCCGCCGATC
GACCTGTTCGAGGACATCGC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 137; Mature: 137

Protein sequence:

>137_residues
MLALQPVDTAVTAFRPDPITQDEAAAMFRAVLNLFGKWELTDEQAATLLDMPVRSYRRWKAEGPGRISRDARARLSNLMG
IHKALRIIFSEATRGYTWIKAANEAFGGASALEVMLGGELTDIMRVRRYLDAERGGW

Sequences:

>Translated_137_residues
MLALQPVDTAVTAFRPDPITQDEAAAMFRAVLNLFGKWELTDEQAATLLDMPVRSYRRWKAEGPGRISRDARARLSNLMG
IHKALRIIFSEATRGYTWIKAANEAFGGASALEVMLGGELTDIMRVRRYLDAERGGW
>Mature_137_residues
MLALQPVDTAVTAFRPDPITQDEAAAMFRAVLNLFGKWELTDEQAATLLDMPVRSYRRWKAEGPGRISRDARARLSNLMG
IHKALRIIFSEATRGYTWIKAANEAFGGASALEVMLGGELTDIMRVRRYLDAERGGW

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 15328; Mature: 15328

Theoretical pI: Translated: 9.65; Mature: 9.65

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.4 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.4 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLALQPVDTAVTAFRPDPITQDEAAAMFRAVLNLFGKWELTDEQAATLLDMPVRSYRRWK
CCCCCCCHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHC
AEGPGRISRDARARLSNLMGIHKALRIIFSEATRGYTWIKAANEAFGGASALEVMLGGEL
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCHHHHHHHHCCCH
TDIMRVRRYLDAERGGW
HHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MLALQPVDTAVTAFRPDPITQDEAAAMFRAVLNLFGKWELTDEQAATLLDMPVRSYRRWK
CCCCCCCHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHC
AEGPGRISRDARARLSNLMGIHKALRIIFSEATRGYTWIKAANEAFGGASALEVMLGGEL
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCHHHHHHHHCCCH
TDIMRVRRYLDAERGGW
HHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]