| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is 103485917
Identifier: 103485917
GI number: 103485917
Start: 430090
End: 430551
Strand: Reverse
Name: 103485917
Synonym: Sala_0424
Alternate gene names: NA
Gene position: 430551-430090 (Counterclockwise)
Preceding gene: 103485918
Following gene: 103485916
Centisome position: 12.87
GC content: 62.12
Gene sequence:
>462_bases ATGATCGATATCGAGGCCGTGATGGCCGACTTTGCCGTTCGTCAGGCCCAGCGGCAGGCCCAGGTAGTCGAAGAGATTCA GCAGCTCAAGACCGTCATTCTCCCGCGCTTGCAGGAAGCCGGAATCGCCCGCGTCGAGATCCGCTTTGACGGCTGCGGCG ACAGCGGTGCTGTTGAGGAATGCGCGTGCCTCGATGCCGCTGGTGCCGCGATCGCGTGCCCCGATGTCACCATTCTGGAA GACGAAGCAGGCAACTCGGATGGTGACGGTTCCGCGGAGCTGCACTCACTCGGCCAAGCTCTCGAGCAGCTGACCTATCT GGCGCTCGAACGTCACCATCCTGGCTGGGAGATCAACGACGGTGCCTGCGGCGAACTGGTGATCGATGTGGCTGAAGCGA CCTTCGTGCTCGACTGCAGCCTGCGCTTCATCGCTACCGATGATCACTCGACCGAGCTCTAG
Upstream 100 bases:
>100_bases GCGCCGGATCGGCGCTGGCGTCGCCCATCAGAGGAAAGGCGTGCGCCTGTCGGTTGGAGCCAGCGAATGGTCGTTGGCTC CTTTCTACAGGAGGTATTCC
Downstream 100 bases:
>100_bases GAGACTTGGCATGGCCCATTGCTATTACCACGCCCTCTCGTCGGTCCGGAAATGGGGCGGCAGGGTCGATGACTATCTCC CGCTGCACCAGTGGTTCGAC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 153; Mature: 153
Protein sequence:
>153_residues MIDIEAVMADFAVRQAQRQAQVVEEIQQLKTVILPRLQEAGIARVEIRFDGCGDSGAVEECACLDAAGAAIACPDVTILE DEAGNSDGDGSAELHSLGQALEQLTYLALERHHPGWEINDGACGELVIDVAEATFVLDCSLRFIATDDHSTEL
Sequences:
>Translated_153_residues MIDIEAVMADFAVRQAQRQAQVVEEIQQLKTVILPRLQEAGIARVEIRFDGCGDSGAVEECACLDAAGAAIACPDVTILE DEAGNSDGDGSAELHSLGQALEQLTYLALERHHPGWEINDGACGELVIDVAEATFVLDCSLRFIATDDHSTEL >Mature_153_residues MIDIEAVMADFAVRQAQRQAQVVEEIQQLKTVILPRLQEAGIARVEIRFDGCGDSGAVEECACLDAAGAAIACPDVTILE DEAGNSDGDGSAELHSLGQALEQLTYLALERHHPGWEINDGACGELVIDVAEATFVLDCSLRFIATDDHSTEL
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 16367; Mature: 16367
Theoretical pI: Translated: 3.85; Mature: 3.85
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
3.9 %Cys (Translated Protein) 1.3 %Met (Translated Protein) 5.2 %Cys+Met (Translated Protein) 3.9 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 5.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MIDIEAVMADFAVRQAQRQAQVVEEIQQLKTVILPRLQEAGIARVEIRFDGCGDSGAVEE CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCHHH CACLDAAGAAIACPDVTILEDEAGNSDGDGSAELHSLGQALEQLTYLALERHHPGWEIND HHHHHCCCCEEECCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC GACGELVIDVAEATFVLDCSLRFIATDDHSTEL CCCHHHHHHHHHHEEEEECEEEEEEECCCCCCC >Mature Secondary Structure MIDIEAVMADFAVRQAQRQAQVVEEIQQLKTVILPRLQEAGIARVEIRFDGCGDSGAVEE CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCHHH CACLDAAGAAIACPDVTILEDEAGNSDGDGSAELHSLGQALEQLTYLALERHHPGWEIND HHHHHCCCCEEECCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC GACGELVIDVAEATFVLDCSLRFIATDDHSTEL CCCHHHHHHHHHHEEEEECEEEEEEECCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA