Definition Sphingopyxis alaskensis RB2256, complete genome.
Accession NC_008048
Length 3,345,170

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The map label for this gene is 103485918

Identifier: 103485918

GI number: 103485918

Start: 430674

End: 431627

Strand: Reverse

Name: 103485918

Synonym: Sala_0425

Alternate gene names: NA

Gene position: 431627-430674 (Counterclockwise)

Preceding gene: 103485919

Following gene: 103485917

Centisome position: 12.9

GC content: 63.63

Gene sequence:

>954_bases
ATGCACACGTCATTCGCCGATCAACTCGCCGGGCTCGATCTCGCCGGTTTCTCGATTGGACCGGCTCCCGTATCGACAAG
CGATTTCCCAGTCCGGGAGGCGGTCGTCCAAACCCTCGAAGCGGTCTGGTCCGATCTTTTCGCCATGGTGTCCGGGACCG
CTCTTGAAGCCGACGCCGAGGATCTTGGCTGGGCCTTCGTCAACATCTTTCACCGCTCGGCGGAACGCAAATCGACTGCC
CTTGACCGGGCGACCGACGAGGTCCGCGCGCTGATTGCTACGGCCGATGGATCCGAGGTCCACACCCATGACCTTGAGAC
CCAGGTTGAGCGGGCGCAATGCGCAGAAAGCGCTATGCTGGCACTCGAAGAGATGCGTGAAGTCGCAGCAGGCCTATACC
TCAACGAGTTCGGTTCCTCCTGGAAGCCAGTCTCCAGTTCTCGCTTCAATCACAGTGCAATGCTGACCTCGGCGCTCGTC
GAAGGTCGCGACTTCCTGCGCGCCCGCGCCGAGGCCAAACGCCGTGCGGCCGTGCCCGAAGGAACCCCGGTCGTGTTCGC
CGGAGGGCGCACCCGTCATGCTACCGAAGACGATGCGCTGACCTTCGGCAACAATGTTTGGGCCACGCTCGACAAGGTCC
GCGACCGCGTGCCGGATATGGTCTTGATCCATGGCGGCGACACCAAGGGCGTCGACCGTCTGGCTTCGAGCTGGGCTGAA
CGTCGCGGCATCCCGCAGGTCACGTTCTCGCTCGACATGCGGCTGGGCGCCCGTGCCGGCTTCAAGCGCAACGAGCGGAT
GCTCTCCCTCGATCCGCGCTATGTCATCGCCTTTCCGGGCAATGGCGTGCTCGAACGTCTGGTCATCGAAGCCAAGGCCC
GGCGGATCACCGTGGTCGATCGCCGCGGGCCCCTCGGTACCAATCCGAAGAACACTTCGGCCAGGACCGACTAA

Upstream 100 bases:

>100_bases
CGCGGGTGCGCAATCCTGCCTGAATGCTGGCCCTGACGGGCTCTCGCTGGCGCAGCCATGAACGGGTGCGTCGGCCTTAC
GTCAGTCAGGAGGATACCCT

Downstream 100 bases:

>100_bases
GGCCCTGTCGGTCTTCGCGCCAGCGCCGGATCGGCGCTGGCGTCGCCCATCAGAGGAAAGGCGTGCGCCTGTCGGTTGGA
GCCAGCGAATGGTCGTTGGC

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 317; Mature: 317

Protein sequence:

>317_residues
MHTSFADQLAGLDLAGFSIGPAPVSTSDFPVREAVVQTLEAVWSDLFAMVSGTALEADAEDLGWAFVNIFHRSAERKSTA
LDRATDEVRALIATADGSEVHTHDLETQVERAQCAESAMLALEEMREVAAGLYLNEFGSSWKPVSSSRFNHSAMLTSALV
EGRDFLRARAEAKRRAAVPEGTPVVFAGGRTRHATEDDALTFGNNVWATLDKVRDRVPDMVLIHGGDTKGVDRLASSWAE
RRGIPQVTFSLDMRLGARAGFKRNERMLSLDPRYVIAFPGNGVLERLVIEAKARRITVVDRRGPLGTNPKNTSARTD

Sequences:

>Translated_317_residues
MHTSFADQLAGLDLAGFSIGPAPVSTSDFPVREAVVQTLEAVWSDLFAMVSGTALEADAEDLGWAFVNIFHRSAERKSTA
LDRATDEVRALIATADGSEVHTHDLETQVERAQCAESAMLALEEMREVAAGLYLNEFGSSWKPVSSSRFNHSAMLTSALV
EGRDFLRARAEAKRRAAVPEGTPVVFAGGRTRHATEDDALTFGNNVWATLDKVRDRVPDMVLIHGGDTKGVDRLASSWAE
RRGIPQVTFSLDMRLGARAGFKRNERMLSLDPRYVIAFPGNGVLERLVIEAKARRITVVDRRGPLGTNPKNTSARTD
>Mature_317_residues
MHTSFADQLAGLDLAGFSIGPAPVSTSDFPVREAVVQTLEAVWSDLFAMVSGTALEADAEDLGWAFVNIFHRSAERKSTA
LDRATDEVRALIATADGSEVHTHDLETQVERAQCAESAMLALEEMREVAAGLYLNEFGSSWKPVSSSRFNHSAMLTSALV
EGRDFLRARAEAKRRAAVPEGTPVVFAGGRTRHATEDDALTFGNNVWATLDKVRDRVPDMVLIHGGDTKGVDRLASSWAE
RRGIPQVTFSLDMRLGARAGFKRNERMLSLDPRYVIAFPGNGVLERLVIEAKARRITVVDRRGPLGTNPKNTSARTD

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 34608; Mature: 34608

Theoretical pI: Translated: 6.19; Mature: 6.19

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHTSFADQLAGLDLAGFSIGPAPVSTSDFPVREAVVQTLEAVWSDLFAMVSGTALEADAE
CCCCHHHHHCCCEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHH
DLGWAFVNIFHRSAERKSTALDRATDEVRALIATADGSEVHTHDLETQVERAQCAESAML
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCCCCHHHHHHHHHHHHHHHHHHH
ALEEMREVAAGLYLNEFGSSWKPVSSSRFNHSAMLTSALVEGRDFLRARAEAKRRAAVPE
HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
GTPVVFAGGRTRHATEDDALTFGNNVWATLDKVRDRVPDMVLIHGGDTKGVDRLASSWAE
CCEEEEECCCCCCCCCCCCEEECCCHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHH
RRGIPQVTFSLDMRLGARAGFKRNERMLSLDPRYVIAFPGNGVLERLVIEAKARRITVVD
HCCCCEEEEEEECHHCCCCCCCCCCCEEEECCCEEEEECCCHHHHHHHHHHCCCEEEEEE
RRGPLGTNPKNTSARTD
CCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MHTSFADQLAGLDLAGFSIGPAPVSTSDFPVREAVVQTLEAVWSDLFAMVSGTALEADAE
CCCCHHHHHCCCEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHH
DLGWAFVNIFHRSAERKSTALDRATDEVRALIATADGSEVHTHDLETQVERAQCAESAML
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCCCCHHHHHHHHHHHHHHHHHHH
ALEEMREVAAGLYLNEFGSSWKPVSSSRFNHSAMLTSALVEGRDFLRARAEAKRRAAVPE
HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
GTPVVFAGGRTRHATEDDALTFGNNVWATLDKVRDRVPDMVLIHGGDTKGVDRLASSWAE
CCEEEEECCCCCCCCCCCCEEECCCHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHH
RRGIPQVTFSLDMRLGARAGFKRNERMLSLDPRYVIAFPGNGVLERLVIEAKARRITVVD
HCCCCEEEEEEECHHCCCCCCCCCCCEEEECCCEEEEECCCHHHHHHHHHHCCCEEEEEE
RRGPLGTNPKNTSARTD
CCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA