| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is 103485777
Identifier: 103485777
GI number: 103485777
Start: 280014
End: 280763
Strand: Reverse
Name: 103485777
Synonym: Sala_0282
Alternate gene names: NA
Gene position: 280763-280014 (Counterclockwise)
Preceding gene: 103485778
Following gene: 103485770
Centisome position: 8.39
GC content: 70.0
Gene sequence:
>750_bases ATGATCCGCGGTTTCCTTACCCGGCGCGCCGAATGGCCCGCGCATGTCCCCGATCCCGACGCGCCGCCGCCGCTCATGCT GCTGTGGCGCGAGATGGGATCGCTCGCGCGCGCAATCGGCGGGCGCATCCGCCCGCTGCCCCCCGAACCCAACCCCGACA GCGACTATCCGCCGGTGATGGTGCTCCCCGGTTTCCTGTCGGGTGACTGGGCGACCAAGGCCCTGCGCGCCGACCTCCGC CGCGCGGGCTTCCGCTGTTATGCGTGGGGCCTCGGCTTCAACCGCGGCGCGACCCCCGACATCATCGAACGGATCGACGG GCGCGTGCAATGGATCATCGACCGCACCGGCTTCGCCCCCGCGCTGGTGGGGTGGAGCCTTGGCGGCATTTACGCGCGCG AATATGCCAAGCGCCACCCCGACAAGGTCGCGCGCGTCGTCACGCTGGGTTCGCCTTTCTCGGGCAGCCGACGCGCCAAC CGCGCGTGGCGGCTCTATCACCTCATCGCGCGCCACCCGGTCGACAATCCGCCGATCGACTTTCACCCGGCGCCGCGTCC CGAAATGCCGACCTTCGCGCTCTGGTCAAAGCATGACGGCGTCGTCGCGGTGAACAGCGCGCGCGGGCTGCCGCACGAGA GCGATCGCGCGGTCGAGGTCGATTGCAGCCATATGGGCTTTGCCTATGCCCCCAATTCGGTCGCCGCGATCGTCCGGGCG CTGACCGAAGAGGTGGCGCCGTCGGAGTGA
Upstream 100 bases:
>100_bases CGCGAGGTCGAGGTGCGCGAGGACGGCACCGTCTGGCTGCTCACCGACGGCGACGACGGCAGGCTGGTGAAGCTGGTTCC GAAACGATAAGAGCCGCCGC
Downstream 100 bases:
>100_bases TCGCCGTGCCGCCGCGGGCAGCGGAGACGTTGGCAGCGGCGGAAACGACGGGCGGCGCCGGGACATCGTTCCAGATCCGC CTCGCCGCAGTCATGTGAAA
Product: hypothetical protein
Products: NA
Alternate protein names: Pgap1 Family Protein
Number of amino acids: Translated: 249; Mature: 249
Protein sequence:
>249_residues MIRGFLTRRAEWPAHVPDPDAPPPLMLLWREMGSLARAIGGRIRPLPPEPNPDSDYPPVMVLPGFLSGDWATKALRADLR RAGFRCYAWGLGFNRGATPDIIERIDGRVQWIIDRTGFAPALVGWSLGGIYAREYAKRHPDKVARVVTLGSPFSGSRRAN RAWRLYHLIARHPVDNPPIDFHPAPRPEMPTFALWSKHDGVVAVNSARGLPHESDRAVEVDCSHMGFAYAPNSVAAIVRA LTEEVAPSE
Sequences:
>Translated_249_residues MIRGFLTRRAEWPAHVPDPDAPPPLMLLWREMGSLARAIGGRIRPLPPEPNPDSDYPPVMVLPGFLSGDWATKALRADLR RAGFRCYAWGLGFNRGATPDIIERIDGRVQWIIDRTGFAPALVGWSLGGIYAREYAKRHPDKVARVVTLGSPFSGSRRAN RAWRLYHLIARHPVDNPPIDFHPAPRPEMPTFALWSKHDGVVAVNSARGLPHESDRAVEVDCSHMGFAYAPNSVAAIVRA LTEEVAPSE >Mature_249_residues MIRGFLTRRAEWPAHVPDPDAPPPLMLLWREMGSLARAIGGRIRPLPPEPNPDSDYPPVMVLPGFLSGDWATKALRADLR RAGFRCYAWGLGFNRGATPDIIERIDGRVQWIIDRTGFAPALVGWSLGGIYAREYAKRHPDKVARVVTLGSPFSGSRRAN RAWRLYHLIARHPVDNPPIDFHPAPRPEMPTFALWSKHDGVVAVNSARGLPHESDRAVEVDCSHMGFAYAPNSVAAIVRA LTEEVAPSE
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 27617; Mature: 27617
Theoretical pI: Translated: 9.74; Mature: 9.74
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 3.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MIRGFLTRRAEWPAHVPDPDAPPPLMLLWREMGSLARAIGGRIRPLPPEPNPDSDYPPVM CCCCHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEE VLPGFLSGDWATKALRADLRRAGFRCYAWGLGFNRGATPDIIERIDGRVQWIIDRTGFAP EECCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCHHHHHHHCCEEEEEEECCCCCH ALVGWSLGGIYAREYAKRHPDKVARVVTLGSPFSGSRRANRAWRLYHLIARHPVDNPPID HHHHHHHHHHHHHHHHHHCHHHHEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCCCC FHPAPRPEMPTFALWSKHDGVVAVNSARGLPHESDRAVEVDCSHMGFAYAPNSVAAIVRA CCCCCCCCCCEEEEECCCCCEEEEECCCCCCCCCCCEEEEECCCCCEEECCHHHHHHHHH LTEEVAPSE HHHHHCCCC >Mature Secondary Structure MIRGFLTRRAEWPAHVPDPDAPPPLMLLWREMGSLARAIGGRIRPLPPEPNPDSDYPPVM CCCCHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEE VLPGFLSGDWATKALRADLRRAGFRCYAWGLGFNRGATPDIIERIDGRVQWIIDRTGFAP EECCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCHHHHHHHCCEEEEEEECCCCCH ALVGWSLGGIYAREYAKRHPDKVARVVTLGSPFSGSRRANRAWRLYHLIARHPVDNPPID HHHHHHHHHHHHHHHHHHCHHHHEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCCCC FHPAPRPEMPTFALWSKHDGVVAVNSARGLPHESDRAVEVDCSHMGFAYAPNSVAAIVRA CCCCCCCCCCEEEEECCCCCEEEEECCCCCCCCCCCEEEEECCCCCEEECCHHHHHHHHH LTEEVAPSE HHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA