Definition Sphingopyxis alaskensis RB2256, complete genome.
Accession NC_008048
Length 3,345,170

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The map label for this gene is 103485765

Identifier: 103485765

GI number: 103485765

Start: 269295

End: 270797

Strand: Reverse

Name: 103485765

Synonym: Sala_0270

Alternate gene names: NA

Gene position: 270797-269295 (Counterclockwise)

Preceding gene: 103485766

Following gene: 103485761

Centisome position: 8.1

GC content: 64.54

Gene sequence:

>1503_bases
ATGAAATCGGGTCTGTCGCTGATCGCGCTGGCGCTTGCCGTCGCGGTTCCTGCCATCGTCCATGCCGAGGACAAGAATGA
CAAGGCGAAGGCCGAAAAGCCCGCCGACTACGAACCGCAAATCCGCACCACCAAACTCAGCGGCACCTTTGGCGGCCAGC
GGATCAATTACGCCGCGACGATTGGTGAGACGATCATCAGGAACAAGGACGGCGTGCCCGAAGTCGCCGTCGTCACCACA
TCCTATGTCAAGGAACCGCGCGACACCAGCCGTCCGGTGACCTTCCTGTTCAACGGCGGCCCCGGTTCGGGCACCGTCTG
GTTGATGATGGGCGCGTTCGGGCCGAAGCGCGTTGCGATCCCCGGCACCGGGGTTGATGACGGCGCGCCGCCCTGGCCCA
TCGTCGACAATCCCGACGCGCTGCTCGACGTCACCGACATCGTGTTCATCGACCCGCCGGGCACGGGCTTTTCGCACCTG
ATCGGCAAGGCCGACCCCAAGGATTATTACGGCGTGACGCAGGATGCGAAGCTGGTCGCCGAAGTGATCCGCCGCTGGCT
CGCCGACAATGGCCGCTGGAACAGCCCCAAATATCTCGGCGGCGAAAGCTATGGCACCACCCGCACCGCCGCGGTCGCGC
ACCAGCTGATGAACGCGACTTACAATGATGTCGCGTTCAACGGGCTGATCCTGATTTCGACCGTGCTCGATTTTGCGGCG
GGCGCCGACACGCCGGGCAACGAGCTGTCGCCGGTCACCAACCTGCCGTCGATGGCGGTCACCGCGCTCTATCACGGCAA
GGCGAGCGCGTCGTCGGTCGAGGCTTTTGCAGAGGAAGCGCGGCAATGGGCGATCGGCCCCTATGCGACCGCGCTGCTCA
AAGGGCAGAAATTGCAGGGCGAGGAGCGCGCCGCGATCCGCCGCGAGCTTGCGCGCTTCACCGGCCTGTCCGAAACCTGG
CTCGAACAGGCGGACCTGCGCGTCACGCCCGCGCGCTTCTACAAGGAGCTGCTGCGCGACCGCGGCCTCACCGTCGGGCG
CCTCGACAGCCGCTATACGGGCAAGGATTATGACCACGCCGGCGAAACCCCCGACAACGATCCCAGCTTTTACGGGATCG
ACGCCAGCTATACCGCGGCGATCAACAGCTGGCTGCGCGACGGATTGGGGTTCAGGACGGACCGCGAATATCAGTCGATC
AGCGGCATCGGCGGGCAATGGGACTGGCGCATCGGCGGGCGCGACACCAACGCCTATCTGAACGTCGCGCCGTACATCGG
ACAGGCGATGCGCGAGAACAGCGGGTTGCGCGTGCTCGTCGCGCAGGGCTGGTATGATTTCGCAACGCCCTTTTTCGCCG
CCGAATATGCGCTGTCACGCACCGGCATCCCGCAGGATCGCATCACCTTTACCTATTATGACGCAGGCCACATGATGTAC
ATCCGCGACGAAGACCGGCGGAAACTGTCGGAGGATGTGCGGGCGTTTATCCGGGCGCGGTAG

Upstream 100 bases:

>100_bases
CCTGACCCCTTCGAACAAAACCCCACTGCAACCGACCAGCACCCTTGCCCCCTCCCCGCGCGCGGCTTAGCGTCCGTGCG
TCAAACGGGGAGACAAGTGT

Downstream 100 bases:

>100_bases
GAAGGCTGCGAACGACCGGAAGCTGCCACAAAGCCCTCTCCCCTTGGGAGAGGGTTGGGTGAGGGTGCCTGAGGTTAGAT
TTCAGGGTGGACAGGTGATC

Product: peptidase S10, serine carboxypeptidase

Products: NA

Alternate protein names: Serine Carboxypeptidase Family Protein; Carboxypeptidase-Related Protein; Serine Carboxypeptidase; Carboxypeptidase C; Serine-Type Carboxypeptidase Family Protein; S10 Family Peptidase; Carboxypeptidase; S10 Family Carboxypeptidase; Carboxypeptidase-Like Protein; Serine Carboxypeptidase Superfamily; Peptidase S

Number of amino acids: Translated: 500; Mature: 500

Protein sequence:

>500_residues
MKSGLSLIALALAVAVPAIVHAEDKNDKAKAEKPADYEPQIRTTKLSGTFGGQRINYAATIGETIIRNKDGVPEVAVVTT
SYVKEPRDTSRPVTFLFNGGPGSGTVWLMMGAFGPKRVAIPGTGVDDGAPPWPIVDNPDALLDVTDIVFIDPPGTGFSHL
IGKADPKDYYGVTQDAKLVAEVIRRWLADNGRWNSPKYLGGESYGTTRTAAVAHQLMNATYNDVAFNGLILISTVLDFAA
GADTPGNELSPVTNLPSMAVTALYHGKASASSVEAFAEEARQWAIGPYATALLKGQKLQGEERAAIRRELARFTGLSETW
LEQADLRVTPARFYKELLRDRGLTVGRLDSRYTGKDYDHAGETPDNDPSFYGIDASYTAAINSWLRDGLGFRTDREYQSI
SGIGGQWDWRIGGRDTNAYLNVAPYIGQAMRENSGLRVLVAQGWYDFATPFFAAEYALSRTGIPQDRITFTYYDAGHMMY
IRDEDRRKLSEDVRAFIRAR

Sequences:

>Translated_500_residues
MKSGLSLIALALAVAVPAIVHAEDKNDKAKAEKPADYEPQIRTTKLSGTFGGQRINYAATIGETIIRNKDGVPEVAVVTT
SYVKEPRDTSRPVTFLFNGGPGSGTVWLMMGAFGPKRVAIPGTGVDDGAPPWPIVDNPDALLDVTDIVFIDPPGTGFSHL
IGKADPKDYYGVTQDAKLVAEVIRRWLADNGRWNSPKYLGGESYGTTRTAAVAHQLMNATYNDVAFNGLILISTVLDFAA
GADTPGNELSPVTNLPSMAVTALYHGKASASSVEAFAEEARQWAIGPYATALLKGQKLQGEERAAIRRELARFTGLSETW
LEQADLRVTPARFYKELLRDRGLTVGRLDSRYTGKDYDHAGETPDNDPSFYGIDASYTAAINSWLRDGLGFRTDREYQSI
SGIGGQWDWRIGGRDTNAYLNVAPYIGQAMRENSGLRVLVAQGWYDFATPFFAAEYALSRTGIPQDRITFTYYDAGHMMY
IRDEDRRKLSEDVRAFIRAR
>Mature_500_residues
MKSGLSLIALALAVAVPAIVHAEDKNDKAKAEKPADYEPQIRTTKLSGTFGGQRINYAATIGETIIRNKDGVPEVAVVTT
SYVKEPRDTSRPVTFLFNGGPGSGTVWLMMGAFGPKRVAIPGTGVDDGAPPWPIVDNPDALLDVTDIVFIDPPGTGFSHL
IGKADPKDYYGVTQDAKLVAEVIRRWLADNGRWNSPKYLGGESYGTTRTAAVAHQLMNATYNDVAFNGLILISTVLDFAA
GADTPGNELSPVTNLPSMAVTALYHGKASASSVEAFAEEARQWAIGPYATALLKGQKLQGEERAAIRRELARFTGLSETW
LEQADLRVTPARFYKELLRDRGLTVGRLDSRYTGKDYDHAGETPDNDPSFYGIDASYTAAINSWLRDGLGFRTDREYQSI
SGIGGQWDWRIGGRDTNAYLNVAPYIGQAMRENSGLRVLVAQGWYDFATPFFAAEYALSRTGIPQDRITFTYYDAGHMMY
IRDEDRRKLSEDVRAFIRAR

Specific function: Unknown

COG id: COG2939

COG function: function code E; Carboxypeptidase C (cathepsin A)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 54805; Mature: 54805

Theoretical pI: Translated: 5.78; Mature: 5.78

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKSGLSLIALALAVAVPAIVHAEDKNDKAKAEKPADYEPQIRTTKLSGTFGGQRINYAAT
CCCCHHHHHHHHHHHHHHHEECCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCEEEEHHH
IGETIIRNKDGVPEVAVVTTSYVKEPRDTSRPVTFLFNGGPGSGTVWLMMGAFGPKRVAI
HHHHHHCCCCCCCCEEEEEHHHHCCCCCCCCCEEEEEECCCCCCEEEEEEECCCCCEEEC
PGTGVDDGAPPWPIVDNPDALLDVTDIVFIDPPGTGFSHLIGKADPKDYYGVTQDAKLVA
CCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCHHHHHCCCCCCHHCCCCCHHHHHH
EVIRRWLADNGRWNSPKYLGGESYGTTRTAAVAHQLMNATYNDVAFNGLILISTVLDFAA
HHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCHHHHHHCHHHHHHHHHHHHC
GADTPGNELSPVTNLPSMAVTALYHGKASASSVEAFAEEARQWAIGPYATALLKGQKLQG
CCCCCCCCCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCC
EERAAIRRELARFTGLSETWLEQADLRVTPARFYKELLRDRGLTVGRLDSRYTGKDYDHA
HHHHHHHHHHHHHCCCCHHHHHHCCCEECHHHHHHHHHHHCCCEEECCCCCCCCCCCCCC
GETPDNDPSFYGIDASYTAAINSWLRDGLGFRTDREYQSISGIGGQWDWRIGGRDTNAYL
CCCCCCCCCEEECCCHHHHHHHHHHHHCCCCCCCCHHHHHCCCCCEEEEEECCCCCCCEE
NVAPYIGQAMRENSGLRVLVAQGWYDFATPFFAAEYALSRTGIPQDRITFTYYDAGHMMY
EECHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCEEE
IRDEDRRKLSEDVRAFIRAR
EECHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MKSGLSLIALALAVAVPAIVHAEDKNDKAKAEKPADYEPQIRTTKLSGTFGGQRINYAAT
CCCCHHHHHHHHHHHHHHHEECCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCEEEEHHH
IGETIIRNKDGVPEVAVVTTSYVKEPRDTSRPVTFLFNGGPGSGTVWLMMGAFGPKRVAI
HHHHHHCCCCCCCCEEEEEHHHHCCCCCCCCCEEEEEECCCCCCEEEEEEECCCCCEEEC
PGTGVDDGAPPWPIVDNPDALLDVTDIVFIDPPGTGFSHLIGKADPKDYYGVTQDAKLVA
CCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCHHHHHCCCCCCHHCCCCCHHHHHH
EVIRRWLADNGRWNSPKYLGGESYGTTRTAAVAHQLMNATYNDVAFNGLILISTVLDFAA
HHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCHHHHHHCHHHHHHHHHHHHC
GADTPGNELSPVTNLPSMAVTALYHGKASASSVEAFAEEARQWAIGPYATALLKGQKLQG
CCCCCCCCCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCC
EERAAIRRELARFTGLSETWLEQADLRVTPARFYKELLRDRGLTVGRLDSRYTGKDYDHA
HHHHHHHHHHHHHCCCCHHHHHHCCCEECHHHHHHHHHHHCCCEEECCCCCCCCCCCCCC
GETPDNDPSFYGIDASYTAAINSWLRDGLGFRTDREYQSISGIGGQWDWRIGGRDTNAYL
CCCCCCCCCEEECCCHHHHHHHHHHHHCCCCCCCCHHHHHCCCCCEEEEEECCCCCCCEE
NVAPYIGQAMRENSGLRVLVAQGWYDFATPFFAAEYALSRTGIPQDRITFTYYDAGHMMY
EECHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCEEE
IRDEDRRKLSEDVRAFIRAR
EECHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA