| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is plsC [C]
Identifier: 103485689
GI number: 103485689
Start: 204922
End: 206478
Strand: Direct
Name: plsC [C]
Synonym: Sala_0193
Alternate gene names: 103485689
Gene position: 204922-206478 (Clockwise)
Preceding gene: 103485688
Following gene: 103485690
Centisome position: 6.13
GC content: 62.81
Gene sequence:
>1557_bases GTGCCAAGACCGCAGCCGCATCTGGATGAAGTGCTCGCGTCCGAGCCCGGATCGCATATCGCCGCGCTTTTCGATTTCGA CGGAACGATCATCGCCGGCTATTCGGCGACCGCGATGCTGCGCGAAAAGTTCCAGCGCCGCGAAATGTCGGTCGAGGAGA TTGCCGAAACCGCACAGGTGATCGCGCAGCATAGCCTGGGCCAGATCGGCTTTTCCGGCCTGATGACTGCCGCCGCCAGA TTCATGAAGGGGGTCGACGAGCAAAGCTTCATCGACTTCGGCGAGGAACTCTACCGCAAGCATATCGCGCGCAAAATCTA TCCCGAAACGCGCGCGATCATCGAGGCGCATCAGGCCAAGGGTCATCGCGTCGCAATCATCTCGTCGGCGACGATCTACC AGATCGAACCGACCGCGCGCGATCTCGGCATCACGGACATCAAATGCTCGGCCTATGAGATCGAGGACGGGGTTTTCACC GGCGAAATCATCCGCCCGCTCTGTTTCGGCGAGGGCAAGGTGCTCGCCGCCGAGGACCTTGCCGCCGACTATGGCCTCGA TCTCGATCAGAGCTATTTCTATTCGGACAGCGACGACGATATCGAACTTTTGGAGCGCGTCGGCAAACCGCGTCCGCTCA ACCCGAACATGAAATTAAAGGCGATCGCCGACGAGCGCGGCTGGCCGGTGCAGCGCTTTGCAAGCCGCGGCACACCGTCG TGGATCGACTATGCCCGCACCCTCTATGCCACCGGCTCGCTCGTCGGCGCCTTCGCCGCGGGCCTGCCGATCTGGGCGCT CACCCGCTCGCAGCGCGAGGCGGTCAATTTCTCGATGGGGCTGTTCGGCGACTTCGCCACTGCGATCACCGGTGTCGAGC TGGAGGTCGAGGGCGAGCGCCACCTCTGGTCGTCGCGCCCCTGCGTCTTCGTCTTCAACCATCAGAGCAAGGCCGATGTA ATGATCCTCGCCAAGCTCATCCGCCGCGACATGGGCGGGGTGGGCAAGAAGGAGATCAGGGACATCCCCATCCTCGGCAA GCTGATGGAATGGGGCGGCACCGTCTTCGTCGACCGCGCCGATGGAAAGAGCGCGATCAAGGCGATGGAACCGCTGATCG ATGCGATCCAGAAGGAAGGCAAGTCGATCTGCATCGCGCCCGAAGGGACGCGCAGCCTGACCCCGAAGCTCGAACCCTTC AAAAAGGGCGCTTTCCACCTCGCGATGCAGGCCGGTGTCCCGATCGTCCCGATCGTGATTCATAACGCCACGGACGTCGC GCCGAAGAACGAGTTTGTGATGCGCCCCGCGACGGTGCGCGTCACCGTGCTGCCGCCCGTCGATACGTCGGGGTGGAGCG TCCGCACGATCAACAACCATGTCCGTGACGTGCGCAACATGTTCCTGCGCACGCTGGGGCAGCCGCAGGAAAGCGTCGCG GAATCGGTGGCGAGGGAAGCTGCGGTCGAGGCAAAGGGGGAAAAGACTCCGAAGAAGGCGGCCACCAAAAGGGCCGCGCC GAAGAAGAAGGCAACCGGAAAGAGCGCCAAGGCATGA
Upstream 100 bases:
>100_bases CCCAAAGGAACGCCGGATTTCCCGGCCATTGATAAACGCCATCTTACCTGCCATCGTGCAGCCCTGAAGCGGCAGGATGA CCGCCTGTGGGGAGATGTGC
Downstream 100 bases:
>100_bases CTGCACATCCCTTTCCCGTTCGCATCGAGCGAAGTCGAGATGCCTATCGGCCGGGCGCGTGCCGTCGGCGTGTCTCGACT TCGCTCGACACGAGCGGGGA
Product: HAD family hydrolase
Products: CoA; 1,2-diacyl-sn-glycerol 3-phosphate
Alternate protein names: NA
Number of amino acids: Translated: 518; Mature: 517
Protein sequence:
>518_residues MPRPQPHLDEVLASEPGSHIAALFDFDGTIIAGYSATAMLREKFQRREMSVEEIAETAQVIAQHSLGQIGFSGLMTAAAR FMKGVDEQSFIDFGEELYRKHIARKIYPETRAIIEAHQAKGHRVAIISSATIYQIEPTARDLGITDIKCSAYEIEDGVFT GEIIRPLCFGEGKVLAAEDLAADYGLDLDQSYFYSDSDDDIELLERVGKPRPLNPNMKLKAIADERGWPVQRFASRGTPS WIDYARTLYATGSLVGAFAAGLPIWALTRSQREAVNFSMGLFGDFATAITGVELEVEGERHLWSSRPCVFVFNHQSKADV MILAKLIRRDMGGVGKKEIRDIPILGKLMEWGGTVFVDRADGKSAIKAMEPLIDAIQKEGKSICIAPEGTRSLTPKLEPF KKGAFHLAMQAGVPIVPIVIHNATDVAPKNEFVMRPATVRVTVLPPVDTSGWSVRTINNHVRDVRNMFLRTLGQPQESVA ESVAREAAVEAKGEKTPKKAATKRAAPKKKATGKSAKA
Sequences:
>Translated_518_residues MPRPQPHLDEVLASEPGSHIAALFDFDGTIIAGYSATAMLREKFQRREMSVEEIAETAQVIAQHSLGQIGFSGLMTAAAR FMKGVDEQSFIDFGEELYRKHIARKIYPETRAIIEAHQAKGHRVAIISSATIYQIEPTARDLGITDIKCSAYEIEDGVFT GEIIRPLCFGEGKVLAAEDLAADYGLDLDQSYFYSDSDDDIELLERVGKPRPLNPNMKLKAIADERGWPVQRFASRGTPS WIDYARTLYATGSLVGAFAAGLPIWALTRSQREAVNFSMGLFGDFATAITGVELEVEGERHLWSSRPCVFVFNHQSKADV MILAKLIRRDMGGVGKKEIRDIPILGKLMEWGGTVFVDRADGKSAIKAMEPLIDAIQKEGKSICIAPEGTRSLTPKLEPF KKGAFHLAMQAGVPIVPIVIHNATDVAPKNEFVMRPATVRVTVLPPVDTSGWSVRTINNHVRDVRNMFLRTLGQPQESVA ESVAREAAVEAKGEKTPKKAATKRAAPKKKATGKSAKA >Mature_517_residues PRPQPHLDEVLASEPGSHIAALFDFDGTIIAGYSATAMLREKFQRREMSVEEIAETAQVIAQHSLGQIGFSGLMTAAARF MKGVDEQSFIDFGEELYRKHIARKIYPETRAIIEAHQAKGHRVAIISSATIYQIEPTARDLGITDIKCSAYEIEDGVFTG EIIRPLCFGEGKVLAAEDLAADYGLDLDQSYFYSDSDDDIELLERVGKPRPLNPNMKLKAIADERGWPVQRFASRGTPSW IDYARTLYATGSLVGAFAAGLPIWALTRSQREAVNFSMGLFGDFATAITGVELEVEGERHLWSSRPCVFVFNHQSKADVM ILAKLIRRDMGGVGKKEIRDIPILGKLMEWGGTVFVDRADGKSAIKAMEPLIDAIQKEGKSICIAPEGTRSLTPKLEPFK KGAFHLAMQAGVPIVPIVIHNATDVAPKNEFVMRPATVRVTVLPPVDTSGWSVRTINNHVRDVRNMFLRTLGQPQESVAE SVAREAAVEAKGEKTPKKAATKRAAPKKKATGKSAKA
Specific function: Converts Lysophosphatidic Acid (Lpa) Into Phosphatidic Acid By Incorporating An Acyl Moiety At The 2 Position. This Enzyme Can Utilize Either Acyl-CoA Or Acyl-Acyl Carrier Protein As The Fatty Acyl Donor. [C]
COG id: COG0560
COG function: function code E; Phosphoserine phosphatase
Gene ontology:
Cell location: Inner Membrane-Associated [C]
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the serB family [H]
Homologues:
Organism=Homo sapiens, GI6041665, Length=208, Percent_Identity=34.6153846153846, Blast_Score=115, Evalue=1e-25, Organism=Homo sapiens, GI5453718, Length=163, Percent_Identity=35.5828220858896, Blast_Score=101, Evalue=2e-21, Organism=Homo sapiens, GI15100175, Length=163, Percent_Identity=35.5828220858896, Blast_Score=101, Evalue=2e-21, Organism=Escherichia coli, GI1789395, Length=211, Percent_Identity=30.8056872037915, Blast_Score=97, Evalue=3e-21, Organism=Caenorhabditis elegans, GI17568319, Length=223, Percent_Identity=28.6995515695067, Blast_Score=92, Evalue=9e-19, Organism=Caenorhabditis elegans, GI17564032, Length=215, Percent_Identity=24.1860465116279, Blast_Score=82, Evalue=6e-16, Organism=Saccharomyces cerevisiae, GI6320151, Length=240, Percent_Identity=30.8333333333333, Blast_Score=118, Evalue=3e-27, Organism=Drosophila melanogaster, GI24641614, Length=210, Percent_Identity=28.5714285714286, Blast_Score=101, Evalue=1e-21, Organism=Drosophila melanogaster, GI24641612, Length=210, Percent_Identity=28.5714285714286, Blast_Score=101, Evalue=1e-21, Organism=Drosophila melanogaster, GI281364648, Length=166, Percent_Identity=31.9277108433735, Blast_Score=93, Evalue=6e-19, Organism=Drosophila melanogaster, GI24582856, Length=166, Percent_Identity=31.9277108433735, Blast_Score=93, Evalue=6e-19, Organism=Drosophila melanogaster, GI24582854, Length=166, Percent_Identity=31.9277108433735, Blast_Score=93, Evalue=6e-19,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR005834 - InterPro: IPR023214 - InterPro: IPR006383 - InterPro: IPR006385 [H]
Pfam domain/function: PF00702 Hydrolase [H]
EC number: 2.3.1.51; 3.1.3.3
Molecular weight: Translated: 56846; Mature: 56715
Theoretical pI: Translated: 8.02; Mature: 8.02
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 2.7 %Met (Translated Protein) 3.5 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 2.5 %Met (Mature Protein) 3.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPRPQPHLDEVLASEPGSHIAALFDFDGTIIAGYSATAMLREKFQRREMSVEEIAETAQV CCCCCCHHHHHHHCCCCCCEEEEEECCCCEEECCHHHHHHHHHHHHHCCCHHHHHHHHHH IAQHSLGQIGFSGLMTAAARFMKGVDEQSFIDFGEELYRKHIARKIYPETRAIIEAHQAK HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCC GHRVAIISSATIYQIEPTARDLGITDIKCSAYEIEDGVFTGEIIRPLCFGEGKVLAAEDL CCEEEEEECCEEEEECCCHHHCCCCEEEEEEEEECCCCEEHHHHHHHHCCCCCEEEHHHH AADYGLDLDQSYFYSDSDDDIELLERVGKPRPLNPNMKLKAIADERGWPVQRFASRGTPS HHHCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCEEEEECCCCCCCHHHHHCCCCCH WIDYARTLYATGSLVGAFAAGLPIWALTRSQREAVNFSMGLFGDFATAITGVELEVEGER HHHHHHHHHHHHHHHHHHHCCCCCEECCCCHHHHHCCHHHHHHHHHHHHCCCEEEECCCH HLWSSRPCVFVFNHQSKADVMILAKLIRRDMGGVGKKEIRDIPILGKLMEWGGTVFVDRA HHCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCHHHHHCCCHHHHHHHCCCEEEEECC DGKSAIKAMEPLIDAIQKEGKSICIAPEGTRSLTPKLEPFKKGAFHLAMQAGVPIVPIVI CCHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCHHHCCCEEEHHHCCCCEEEEEE HNATDVAPKNEFVMRPATVRVTVLPPVDTSGWSVRTINNHVRDVRNMFLRTLGQPQESVA ECCCCCCCCCCEEECCCEEEEEEECCCCCCCCEEEEHHHHHHHHHHHHHHHHCCCHHHHH ESVAREAAVEAKGEKTPKKAATKRAAPKKKATGKSAKA HHHHHHHHHHCCCCCCCHHHHHHHCCCCHHCCCCCCCC >Mature Secondary Structure PRPQPHLDEVLASEPGSHIAALFDFDGTIIAGYSATAMLREKFQRREMSVEEIAETAQV CCCCCHHHHHHHCCCCCCEEEEEECCCCEEECCHHHHHHHHHHHHHCCCHHHHHHHHHH IAQHSLGQIGFSGLMTAAARFMKGVDEQSFIDFGEELYRKHIARKIYPETRAIIEAHQAK HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCC GHRVAIISSATIYQIEPTARDLGITDIKCSAYEIEDGVFTGEIIRPLCFGEGKVLAAEDL CCEEEEEECCEEEEECCCHHHCCCCEEEEEEEEECCCCEEHHHHHHHHCCCCCEEEHHHH AADYGLDLDQSYFYSDSDDDIELLERVGKPRPLNPNMKLKAIADERGWPVQRFASRGTPS HHHCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCEEEEECCCCCCCHHHHHCCCCCH WIDYARTLYATGSLVGAFAAGLPIWALTRSQREAVNFSMGLFGDFATAITGVELEVEGER HHHHHHHHHHHHHHHHHHHCCCCCEECCCCHHHHHCCHHHHHHHHHHHHCCCEEEECCCH HLWSSRPCVFVFNHQSKADVMILAKLIRRDMGGVGKKEIRDIPILGKLMEWGGTVFVDRA HHCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCHHHHHCCCHHHHHHHCCCEEEEECC DGKSAIKAMEPLIDAIQKEGKSICIAPEGTRSLTPKLEPFKKGAFHLAMQAGVPIVPIVI CCHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCHHHCCCEEEHHHCCCCEEEEEE HNATDVAPKNEFVMRPATVRVTVLPPVDTSGWSVRTINNHVRDVRNMFLRTLGQPQESVA ECCCCCCCCCCEEECCCEEEEEEECCCCCCCCEEEEHHHHHHHHHHHHHHHHCCCHHHHH ESVAREAAVEAKGEKTPKKAATKRAAPKKKATGKSAKA HHHHHHHHHHCCCCCCCHHHHHHHCCCCHHCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: acyl-CoA; 1-acyl-sn-glycerol 3-phosphate
Specific reaction: acyl-CoA + 1-acyl-sn-glycerol 3-phosphate = CoA + 1,2-diacyl-sn-glycerol 3-phosphate
General reaction: Acyl group transfer [C]
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 11234002 [H]