| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is eda [H]
Identifier: 103485688
GI number: 103485688
Start: 204199
End: 204819
Strand: Direct
Name: eda [H]
Synonym: Sala_0192
Alternate gene names: 103485688
Gene position: 204199-204819 (Clockwise)
Preceding gene: 103485687
Following gene: 103485689
Centisome position: 6.1
GC content: 69.4
Gene sequence:
>621_bases ATGTCCGACAGCGGTATCGAGCAGATCATGACCCTCGCGCCGGTCATCCCGGTGATCGTGATCGACCGCGTCGAGGATGC GGTGCCGATGGCCGAGGCGCTGGTCGCGGGCGGGCTCCGCGTGCTTGAGGTGACGCTGCGGACCCCCGCCGCGCTCGACG CGATCCGCGCGATGAAAAGGGTTCCGGGCGCGGTGGTCGGCGCGGGCACCGTGCTCAATCCCCGGATGCTCAAGGATGCG CTGGACGCGGGCAGCGAGTTCATCGTCTCGCCTGGTCTCACCGACAGCCTGGGCGAGGCGGCGGTAGCGAGCGGCATTCC CTTCCTTCCCGGCGTCGCCAATGCGTCGAACGTGATGATGGGGCTCGACATGGGGTTGGGCAGCTTCAAATTTTTCCCCG CGGCGACGAGCGGCGGCATTCCGGCGCTGAAGGCGCTCGCGGGTCCTTTCGGCGGGGTCAATTTCTGCCCCACCGGCGGC ATCAGCGCCGCAACCGCGCCCGAATGGCTCGCGCTCGAACCCGTGCGCTGCGTCGGCGGCAGCTGGGTCGTTCCGGCGGG GCCGCTCGATCCGGTGCGGATCGAAGCATTGGCGAAGGAAGCGGCGGCGCTTCGGACCTGA
Upstream 100 bases:
>100_bases AATCCGTCGCCCCCGCGAAGGCGGGGGCCGCTACCGGCCTTGGGCCACCTTGCCACCGGCCCCCGCCTTCGCGGGGGCGA CGAACGAAATTGGAGTGAAC
Downstream 100 bases:
>100_bases CTCCCAAAGGAACGCCGGATTTCCCGGCCATTGATAAACGCCATCTTACCTGCCATCGTGCAGCCCTGAAGCGGCAGGAT GACCGCCTGTGGGGAGATGT
Product: 2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase
Products: NA
Alternate protein names: 4-hydroxy-2-oxoglutarate aldolase; 2-keto-4-hydroxyglutarate aldolase; KHG-aldolase; 2-dehydro-3-deoxy-phosphogluconate aldolase; 2-keto-3-deoxy-6-phosphogluconate aldolase; KDPG-aldolase; Phospho-2-dehydro-3-deoxygluconate aldolase; Phospho-2-keto-3-deoxygluconate aldolase [H]
Number of amino acids: Translated: 206; Mature: 205
Protein sequence:
>206_residues MSDSGIEQIMTLAPVIPVIVIDRVEDAVPMAEALVAGGLRVLEVTLRTPAALDAIRAMKRVPGAVVGAGTVLNPRMLKDA LDAGSEFIVSPGLTDSLGEAAVASGIPFLPGVANASNVMMGLDMGLGSFKFFPAATSGGIPALKALAGPFGGVNFCPTGG ISAATAPEWLALEPVRCVGGSWVVPAGPLDPVRIEALAKEAAALRT
Sequences:
>Translated_206_residues MSDSGIEQIMTLAPVIPVIVIDRVEDAVPMAEALVAGGLRVLEVTLRTPAALDAIRAMKRVPGAVVGAGTVLNPRMLKDA LDAGSEFIVSPGLTDSLGEAAVASGIPFLPGVANASNVMMGLDMGLGSFKFFPAATSGGIPALKALAGPFGGVNFCPTGG ISAATAPEWLALEPVRCVGGSWVVPAGPLDPVRIEALAKEAAALRT >Mature_205_residues SDSGIEQIMTLAPVIPVIVIDRVEDAVPMAEALVAGGLRVLEVTLRTPAALDAIRAMKRVPGAVVGAGTVLNPRMLKDAL DAGSEFIVSPGLTDSLGEAAVASGIPFLPGVANASNVMMGLDMGLGSFKFFPAATSGGIPALKALAGPFGGVNFCPTGGI SAATAPEWLALEPVRCVGGSWVVPAGPLDPVRIEALAKEAAALRT
Specific function: KEY ENZYME IN THE ENTNER-DOUDOROFF PATHWAY. PARTICIPATES IN THE REGULATION OF THE INTRACELLULAR LEVEL OF GLYOXYLATE. [C]
COG id: COG0800
COG function: function code G; 2-keto-3-deoxy-6-phosphogluconate aldolase
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the KHG/KDPG aldolase family [H]
Homologues:
Organism=Escherichia coli, GI1788156, Length=199, Percent_Identity=58.2914572864322, Blast_Score=209, Evalue=1e-55,
Paralogues:
None
Copy number: 2,000 Molecules/Cell In: Glucose minimal media [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000887 - InterPro: IPR013785 [H]
Pfam domain/function: PF01081 Aldolase [H]
EC number: =4.1.3.16; =4.1.2.14 [H]
Molecular weight: Translated: 20768; Mature: 20636
Theoretical pI: Translated: 4.47; Mature: 4.47
Prosite motif: PS00159 ALDOLASE_KDPG_KHG_1 ; PS00160 ALDOLASE_KDPG_KHG_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 3.9 %Met (Translated Protein) 4.9 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 3.4 %Met (Mature Protein) 4.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSDSGIEQIMTLAPVIPVIVIDRVEDAVPMAEALVAGGLRVLEVTLRTPAALDAIRAMKR CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHH VPGAVVGAGTVLNPRMLKDALDAGSEFIVSPGLTDSLGEAAVASGIPFLPGVANASNVMM CCCCEECCCCCCCHHHHHHHHHCCCCEEECCCCCCHHHHHHHHCCCCCCCCCCCCCCEEE GLDMGLGSFKFFPAATSGGIPALKALAGPFGGVNFCPTGGISAATAPEWLALEPVRCVGG EECCCCCCEEEECCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEECCCHHHCCC SWVVPAGPLDPVRIEALAKEAAALRT CEECCCCCCCHHHHHHHHHHHHHHCC >Mature Secondary Structure SDSGIEQIMTLAPVIPVIVIDRVEDAVPMAEALVAGGLRVLEVTLRTPAALDAIRAMKR CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHH VPGAVVGAGTVLNPRMLKDALDAGSEFIVSPGLTDSLGEAAVASGIPFLPGVANASNVMM CCCCEECCCCCCCHHHHHHHHHCCCCEEECCCCCCHHHHHHHHCCCCCCCCCCCCCCEEE GLDMGLGSFKFFPAATSGGIPALKALAGPFGGVNFCPTGGISAATAPEWLALEPVRCVGG EECCCCCCEEEECCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEECCCHHHCCC SWVVPAGPLDPVRIEALAKEAAALRT CEECCCCCCCHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 1809834 [H]