| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is 103485676
Identifier: 103485676
GI number: 103485676
Start: 183563
End: 184933
Strand: Direct
Name: 103485676
Synonym: Sala_0180
Alternate gene names: NA
Gene position: 183563-184933 (Clockwise)
Preceding gene: 103485675
Following gene: 103485677
Centisome position: 5.49
GC content: 67.76
Gene sequence:
>1371_bases ATGGCCGGCCATCATCCTGGCGTGCCGGGCCTCGGCGATGCACCGTTCAACGCCGGTGGTCGCCGGTCGGCACGGCCGGG GGCCGGCCGCGAGGTCGATGAAGACGACGACGGCATCGGCGACGACGACGTTCATGGCCGCGCGCTGGTCCTCGCCAGCG TTGCGCGCGACGCGCGGCTCAATAAAAAGTTCCTGCTGCTGATCACGCTGTCGGCGGCGATCGCGACGCTCGGGCTGCTG CAAAGCTCGGCCGCGGTCGTCATCGGAGCGATGCTCGTGTCGCCGCTGCTCGGCCCGATCATGGGGATCGGTTTCGGTCT CGCGACGCTCGAAAGCAACCTCATCAAGCGATCGCTGGTCACGATGGCCGCGGGCATGGCGGTGGCGATCTTCGTCGCGG TGCTCATCATCTGGCTGTCGCCGATCCGCGACGTCACACCCGAAGTTCGCGCCCGGACGCAACCGACCTTGCTCGACCTG GGGGTGGCGGTCGTCGGCGGCATCGCCGGCGTCTATGCGATCATGCGCAAACTGTCGGGGGTGATGGTCGGGGTCGCAAT TGCAACGGCGCTGGTGCCGCCGCTTTCCACAATCGGTTTCGGCCTTGCGACAGGGCGTTTCGACTTCGCGGTCGGTGCCG CGCTGCTGTTTCTGACGAATACGCTGGCGATTGCCTTTGCCGCGACGATCATCGCGCGGTTCAACCGTTTCGGCCCGTCG CTCACGCCGCAGCATACGGCGATGCAGGTGACGGGGATTTTGTTCACGCTGGGCATATTGTCGATACCGCTCGCGCTCAC GCTCAACAATCTGGCGGGTGAGGTGCGCGCGCGTTCGATTGTGCAGGCCGAATTGCGCAGCCTGCTCGACGAAAGCGACC GCGTTGACAGCATGAATGTGCGCATGGAGCGCGACACAGTGGCCGTCGACGGGGTGATCCTCGTCGATCGTTATGTCGCC AAGCTCGACACCGAGCTGGCGGTGCGCATCCGCAAGGCGCTCGACCGCGACGCGCGCGTCAGCATCGTCCAGCTCAGGCA ACAGACCAACGCCGCGGTGCAGGTGGAGGAGCAGCTCAACCGCCGCCTTGCGACGCTCGAACAGCGCGAGGAGGATGCGC GCGCGATCCTCGCCGGGCTGACTGTCGGCGAACTCGTCCGCCGCGACCGGGTGCTGATCGACGCGCAGGCGCGCCGGGTC GTCGTCCAGCGCGACCGCGAGGCCGAGGGCGAACAGGTCGCCGCCGCGGTCGACCGCATCATGGCGGCGGTGCAGGCCTC CCATCCCCGCTGGCTCGTACAGAACGGGGCGCTGACCGCCGCCGAGGAGCCGGAGAAAACCGAGGCGGAGTCCAGCCCGG CAACGCCATAG
Upstream 100 bases:
>100_bases ATGAGGACGCGCCGATCTTTCAGGTCGCCGACCTCGGCCTCGTCGCTGATTTGTTCAGTGCGGTGCCCGAGCTTACGGCC AAGATCTGACCCGCCGCACC
Downstream 100 bases:
>100_bases ACTGGCCGTCATCGATCCCGCGGCCACGTGGCGGGATTCGATGCGTATACGTATACCCTATGGTGATCCGGCGCGATTGG TTTCAATTGCGAGGCTCAAG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 456; Mature: 455
Protein sequence:
>456_residues MAGHHPGVPGLGDAPFNAGGRRSARPGAGREVDEDDDGIGDDDVHGRALVLASVARDARLNKKFLLLITLSAAIATLGLL QSSAAVVIGAMLVSPLLGPIMGIGFGLATLESNLIKRSLVTMAAGMAVAIFVAVLIIWLSPIRDVTPEVRARTQPTLLDL GVAVVGGIAGVYAIMRKLSGVMVGVAIATALVPPLSTIGFGLATGRFDFAVGAALLFLTNTLAIAFAATIIARFNRFGPS LTPQHTAMQVTGILFTLGILSIPLALTLNNLAGEVRARSIVQAELRSLLDESDRVDSMNVRMERDTVAVDGVILVDRYVA KLDTELAVRIRKALDRDARVSIVQLRQQTNAAVQVEEQLNRRLATLEQREEDARAILAGLTVGELVRRDRVLIDAQARRV VVQRDREAEGEQVAAAVDRIMAAVQASHPRWLVQNGALTAAEEPEKTEAESSPATP
Sequences:
>Translated_456_residues MAGHHPGVPGLGDAPFNAGGRRSARPGAGREVDEDDDGIGDDDVHGRALVLASVARDARLNKKFLLLITLSAAIATLGLL QSSAAVVIGAMLVSPLLGPIMGIGFGLATLESNLIKRSLVTMAAGMAVAIFVAVLIIWLSPIRDVTPEVRARTQPTLLDL GVAVVGGIAGVYAIMRKLSGVMVGVAIATALVPPLSTIGFGLATGRFDFAVGAALLFLTNTLAIAFAATIIARFNRFGPS LTPQHTAMQVTGILFTLGILSIPLALTLNNLAGEVRARSIVQAELRSLLDESDRVDSMNVRMERDTVAVDGVILVDRYVA KLDTELAVRIRKALDRDARVSIVQLRQQTNAAVQVEEQLNRRLATLEQREEDARAILAGLTVGELVRRDRVLIDAQARRV VVQRDREAEGEQVAAAVDRIMAAVQASHPRWLVQNGALTAAEEPEKTEAESSPATP >Mature_455_residues AGHHPGVPGLGDAPFNAGGRRSARPGAGREVDEDDDGIGDDDVHGRALVLASVARDARLNKKFLLLITLSAAIATLGLLQ SSAAVVIGAMLVSPLLGPIMGIGFGLATLESNLIKRSLVTMAAGMAVAIFVAVLIIWLSPIRDVTPEVRARTQPTLLDLG VAVVGGIAGVYAIMRKLSGVMVGVAIATALVPPLSTIGFGLATGRFDFAVGAALLFLTNTLAIAFAATIIARFNRFGPSL TPQHTAMQVTGILFTLGILSIPLALTLNNLAGEVRARSIVQAELRSLLDESDRVDSMNVRMERDTVAVDGVILVDRYVAK LDTELAVRIRKALDRDARVSIVQLRQQTNAAVQVEEQLNRRLATLEQREEDARAILAGLTVGELVRRDRVLIDAQARRVV VQRDREAEGEQVAAAVDRIMAAVQASHPRWLVQNGALTAAEEPEKTEAESSPATP
Specific function: Unknown
COG id: COG1808
COG function: function code S; Predicted membrane protein
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Drosophila melanogaster, GI281364738, Length=152, Percent_Identity=32.2368421052632, Blast_Score=75, Evalue=7e-14, Organism=Drosophila melanogaster, GI20129117, Length=168, Percent_Identity=31.547619047619, Blast_Score=75, Evalue=1e-13,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR005233 - InterPro: IPR013031 - InterPro: IPR005240 [H]
Pfam domain/function: PF04087 DUF389 [H]
EC number: NA
Molecular weight: Translated: 48367; Mature: 48236
Theoretical pI: Translated: 6.71; Mature: 6.71
Prosite motif: PS00211 ABC_TRANSPORTER_1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 2.4 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 2.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAGHHPGVPGLGDAPFNAGGRRSARPGAGREVDEDDDGIGDDDVHGRALVLASVARDARL CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHC NKKFLLLITLSAAIATLGLLQSSAAVVIGAMLVSPLLGPIMGIGFGLATLESNLIKRSLV CCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH TMAAGMAVAIFVAVLIIWLSPIRDVTPEVRARTQPTLLDLGVAVVGGIAGVYAIMRKLSG HHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH VMVGVAIATALVPPLSTIGFGLATGRFDFAVGAALLFLTNTLAIAFAATIIARFNRFGPS HHHHHHHHHHHHCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC LTPQHTAMQVTGILFTLGILSIPLALTLNNLAGEVRARSIVQAELRSLLDESDRVDSMNV CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCE RMERDTVAVDGVILVDRYVAKLDTELAVRIRKALDRDARVSIVQLRQQTNAAVQVEEQLN EEECCCEEECCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCHHEEHHHHHH RRLATLEQREEDARAILAGLTVGELVRRDRVLIDAQARRVVVQRDREAEGEQVAAAVDRI HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEHHHHHHHHHCCCCCCHHHHHHHHHHH MAAVQASHPRWLVQNGALTAAEEPEKTEAESSPATP HHHHHCCCCCEEEECCCCCCCCCCCHHCCCCCCCCC >Mature Secondary Structure AGHHPGVPGLGDAPFNAGGRRSARPGAGREVDEDDDGIGDDDVHGRALVLASVARDARL CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHC NKKFLLLITLSAAIATLGLLQSSAAVVIGAMLVSPLLGPIMGIGFGLATLESNLIKRSLV CCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH TMAAGMAVAIFVAVLIIWLSPIRDVTPEVRARTQPTLLDLGVAVVGGIAGVYAIMRKLSG HHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH VMVGVAIATALVPPLSTIGFGLATGRFDFAVGAALLFLTNTLAIAFAATIIARFNRFGPS HHHHHHHHHHHHCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC LTPQHTAMQVTGILFTLGILSIPLALTLNNLAGEVRARSIVQAELRSLLDESDRVDSMNV CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCE RMERDTVAVDGVILVDRYVAKLDTELAVRIRKALDRDARVSIVQLRQQTNAAVQVEEQLN EEECCCEEECCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCHHEEHHHHHH RRLATLEQREEDARAILAGLTVGELVRRDRVLIDAQARRVVVQRDREAEGEQVAAAVDRI HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEHHHHHHHHHCCCCCCHHHHHHHHHHH MAAVQASHPRWLVQNGALTAAEEPEKTEAESSPATP HHHHHCCCCCEEEECCCCCCCCCCCHHCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 8688087 [H]