Definition Sphingopyxis alaskensis RB2256, complete genome.
Accession NC_008048
Length 3,345,170

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The map label for this gene is 103485676

Identifier: 103485676

GI number: 103485676

Start: 183563

End: 184933

Strand: Direct

Name: 103485676

Synonym: Sala_0180

Alternate gene names: NA

Gene position: 183563-184933 (Clockwise)

Preceding gene: 103485675

Following gene: 103485677

Centisome position: 5.49

GC content: 67.76

Gene sequence:

>1371_bases
ATGGCCGGCCATCATCCTGGCGTGCCGGGCCTCGGCGATGCACCGTTCAACGCCGGTGGTCGCCGGTCGGCACGGCCGGG
GGCCGGCCGCGAGGTCGATGAAGACGACGACGGCATCGGCGACGACGACGTTCATGGCCGCGCGCTGGTCCTCGCCAGCG
TTGCGCGCGACGCGCGGCTCAATAAAAAGTTCCTGCTGCTGATCACGCTGTCGGCGGCGATCGCGACGCTCGGGCTGCTG
CAAAGCTCGGCCGCGGTCGTCATCGGAGCGATGCTCGTGTCGCCGCTGCTCGGCCCGATCATGGGGATCGGTTTCGGTCT
CGCGACGCTCGAAAGCAACCTCATCAAGCGATCGCTGGTCACGATGGCCGCGGGCATGGCGGTGGCGATCTTCGTCGCGG
TGCTCATCATCTGGCTGTCGCCGATCCGCGACGTCACACCCGAAGTTCGCGCCCGGACGCAACCGACCTTGCTCGACCTG
GGGGTGGCGGTCGTCGGCGGCATCGCCGGCGTCTATGCGATCATGCGCAAACTGTCGGGGGTGATGGTCGGGGTCGCAAT
TGCAACGGCGCTGGTGCCGCCGCTTTCCACAATCGGTTTCGGCCTTGCGACAGGGCGTTTCGACTTCGCGGTCGGTGCCG
CGCTGCTGTTTCTGACGAATACGCTGGCGATTGCCTTTGCCGCGACGATCATCGCGCGGTTCAACCGTTTCGGCCCGTCG
CTCACGCCGCAGCATACGGCGATGCAGGTGACGGGGATTTTGTTCACGCTGGGCATATTGTCGATACCGCTCGCGCTCAC
GCTCAACAATCTGGCGGGTGAGGTGCGCGCGCGTTCGATTGTGCAGGCCGAATTGCGCAGCCTGCTCGACGAAAGCGACC
GCGTTGACAGCATGAATGTGCGCATGGAGCGCGACACAGTGGCCGTCGACGGGGTGATCCTCGTCGATCGTTATGTCGCC
AAGCTCGACACCGAGCTGGCGGTGCGCATCCGCAAGGCGCTCGACCGCGACGCGCGCGTCAGCATCGTCCAGCTCAGGCA
ACAGACCAACGCCGCGGTGCAGGTGGAGGAGCAGCTCAACCGCCGCCTTGCGACGCTCGAACAGCGCGAGGAGGATGCGC
GCGCGATCCTCGCCGGGCTGACTGTCGGCGAACTCGTCCGCCGCGACCGGGTGCTGATCGACGCGCAGGCGCGCCGGGTC
GTCGTCCAGCGCGACCGCGAGGCCGAGGGCGAACAGGTCGCCGCCGCGGTCGACCGCATCATGGCGGCGGTGCAGGCCTC
CCATCCCCGCTGGCTCGTACAGAACGGGGCGCTGACCGCCGCCGAGGAGCCGGAGAAAACCGAGGCGGAGTCCAGCCCGG
CAACGCCATAG

Upstream 100 bases:

>100_bases
ATGAGGACGCGCCGATCTTTCAGGTCGCCGACCTCGGCCTCGTCGCTGATTTGTTCAGTGCGGTGCCCGAGCTTACGGCC
AAGATCTGACCCGCCGCACC

Downstream 100 bases:

>100_bases
ACTGGCCGTCATCGATCCCGCGGCCACGTGGCGGGATTCGATGCGTATACGTATACCCTATGGTGATCCGGCGCGATTGG
TTTCAATTGCGAGGCTCAAG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 456; Mature: 455

Protein sequence:

>456_residues
MAGHHPGVPGLGDAPFNAGGRRSARPGAGREVDEDDDGIGDDDVHGRALVLASVARDARLNKKFLLLITLSAAIATLGLL
QSSAAVVIGAMLVSPLLGPIMGIGFGLATLESNLIKRSLVTMAAGMAVAIFVAVLIIWLSPIRDVTPEVRARTQPTLLDL
GVAVVGGIAGVYAIMRKLSGVMVGVAIATALVPPLSTIGFGLATGRFDFAVGAALLFLTNTLAIAFAATIIARFNRFGPS
LTPQHTAMQVTGILFTLGILSIPLALTLNNLAGEVRARSIVQAELRSLLDESDRVDSMNVRMERDTVAVDGVILVDRYVA
KLDTELAVRIRKALDRDARVSIVQLRQQTNAAVQVEEQLNRRLATLEQREEDARAILAGLTVGELVRRDRVLIDAQARRV
VVQRDREAEGEQVAAAVDRIMAAVQASHPRWLVQNGALTAAEEPEKTEAESSPATP

Sequences:

>Translated_456_residues
MAGHHPGVPGLGDAPFNAGGRRSARPGAGREVDEDDDGIGDDDVHGRALVLASVARDARLNKKFLLLITLSAAIATLGLL
QSSAAVVIGAMLVSPLLGPIMGIGFGLATLESNLIKRSLVTMAAGMAVAIFVAVLIIWLSPIRDVTPEVRARTQPTLLDL
GVAVVGGIAGVYAIMRKLSGVMVGVAIATALVPPLSTIGFGLATGRFDFAVGAALLFLTNTLAIAFAATIIARFNRFGPS
LTPQHTAMQVTGILFTLGILSIPLALTLNNLAGEVRARSIVQAELRSLLDESDRVDSMNVRMERDTVAVDGVILVDRYVA
KLDTELAVRIRKALDRDARVSIVQLRQQTNAAVQVEEQLNRRLATLEQREEDARAILAGLTVGELVRRDRVLIDAQARRV
VVQRDREAEGEQVAAAVDRIMAAVQASHPRWLVQNGALTAAEEPEKTEAESSPATP
>Mature_455_residues
AGHHPGVPGLGDAPFNAGGRRSARPGAGREVDEDDDGIGDDDVHGRALVLASVARDARLNKKFLLLITLSAAIATLGLLQ
SSAAVVIGAMLVSPLLGPIMGIGFGLATLESNLIKRSLVTMAAGMAVAIFVAVLIIWLSPIRDVTPEVRARTQPTLLDLG
VAVVGGIAGVYAIMRKLSGVMVGVAIATALVPPLSTIGFGLATGRFDFAVGAALLFLTNTLAIAFAATIIARFNRFGPSL
TPQHTAMQVTGILFTLGILSIPLALTLNNLAGEVRARSIVQAELRSLLDESDRVDSMNVRMERDTVAVDGVILVDRYVAK
LDTELAVRIRKALDRDARVSIVQLRQQTNAAVQVEEQLNRRLATLEQREEDARAILAGLTVGELVRRDRVLIDAQARRVV
VQRDREAEGEQVAAAVDRIMAAVQASHPRWLVQNGALTAAEEPEKTEAESSPATP

Specific function: Unknown

COG id: COG1808

COG function: function code S; Predicted membrane protein

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Drosophila melanogaster, GI281364738, Length=152, Percent_Identity=32.2368421052632, Blast_Score=75, Evalue=7e-14,
Organism=Drosophila melanogaster, GI20129117, Length=168, Percent_Identity=31.547619047619, Blast_Score=75, Evalue=1e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005233
- InterPro:   IPR013031
- InterPro:   IPR005240 [H]

Pfam domain/function: PF04087 DUF389 [H]

EC number: NA

Molecular weight: Translated: 48367; Mature: 48236

Theoretical pI: Translated: 6.71; Mature: 6.71

Prosite motif: PS00211 ABC_TRANSPORTER_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHHHHCCCCCEEEECCCCCCCCCCCHHCCCCCCCCC
>Mature Secondary Structure 
AGHHPGVPGLGDAPFNAGGRRSARPGAGREVDEDDDGIGDDDVHGRALVLASVARDARL
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHC
NKKFLLLITLSAAIATLGLLQSSAAVVIGAMLVSPLLGPIMGIGFGLATLESNLIKRSLV
CCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TMAAGMAVAIFVAVLIIWLSPIRDVTPEVRARTQPTLLDLGVAVVGGIAGVYAIMRKLSG
HHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
VMVGVAIATALVPPLSTIGFGLATGRFDFAVGAALLFLTNTLAIAFAATIIARFNRFGPS
HHHHHHHHHHHHCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
LTPQHTAMQVTGILFTLGILSIPLALTLNNLAGEVRARSIVQAELRSLLDESDRVDSMNV
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCE
RMERDTVAVDGVILVDRYVAKLDTELAVRIRKALDRDARVSIVQLRQQTNAAVQVEEQLN
EEECCCEEECCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCHHEEHHHHHH
RRLATLEQREEDARAILAGLTVGELVRRDRVLIDAQARRVVVQRDREAEGEQVAAAVDRI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEHHHHHHHHHCCCCCCHHHHHHHHHHH
MAAVQASHPRWLVQNGALTAAEEPEKTEAESSPATP
HHHHHCCCCCEEEECCCCCCCCCCCHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]