Definition Sphingopyxis alaskensis RB2256, complete genome.
Accession NC_008048
Length 3,345,170

Click here to switch to the map view.

The map label for this gene is 103485618

Identifier: 103485618

GI number: 103485618

Start: 118968

End: 119867

Strand: Reverse

Name: 103485618

Synonym: Sala_0122

Alternate gene names: NA

Gene position: 119867-118968 (Counterclockwise)

Preceding gene: 103485619

Following gene: 103485617

Centisome position: 3.58

GC content: 64.78

Gene sequence:

>900_bases
GTGGTCGTTGCGGCGCAGGATCTTGTCGTGCGGCGCCGACCCGACAAGTTCATCGGGTTCGCGACGGCGGCTTGCTGGTC
AGGGCTTCTGCTTGTTCCACTGGCATGGACCGCACCAGCTGTTTTCCATCTGTCCCCGGGCTACGACCAGCTGATCCAGG
CTTTCCTGTTCGGGTGTCTTTACGGGATCGGCGCGTGGGCGAACCAGGCTTGCGGCTTTGGAACACTCGCGCATTTGACC
GGCGGCAGGCTCGGATATCTTCTGACCCTCGCCGGCTGGGTAATCGGCGCCTCGTTCATATCCAAAGTCTACAGGCCCCA
GCAAATTCCCGAGCCCTCGCTGCTTGCGACGTCACCGCTCGCCGCGATAGCGGCGTGGCTGGCCTTCGCCGCAGTCTGCT
GGTGGAGCTGGCCGCGCCTGCGACTGTTGCGCCGCCGGTCGCGCTGGCGCAAGATGCTGCTTGGACGCGCGCGGATGCGT
CCCTTCGAGGCCATGCTCATCATCGGCATCGGCGGCGGCCTGCTGTACGCCTGCGCCGGGAGCTGGACCTATCTGGGCCT
CCTGTCCAGCTACGCCTCGCAGCTCGTCATGCACGATTTCGCCCCGATTTCTCCTTTGCCGGCGCTTTTGGGCACCGCGA
TGATGATCGGCGGCGGACTATTTGCAGCCGTCCGCTCCGCCAGCTTCCGGTTGCGCGGCACCAACTGGCGTCAAGGCTCG
CGGCATCTCGTCGGCGGCACCATCATGGGGTTGGCCACCCAGCTCATCCCGGGCGGCAATGGGGTCATCATCGTCTACGG
GCTGCCCTCCTTCGCTCCCCATGCCCTGACCGCCTATTTCGGGATGACATTGACCCTCATGCTCATCTTCGCCGCCACAA
ACTATTCCCGCAGGGCATAG

Upstream 100 bases:

>100_bases
AGCGACCCGGCTTGCTCTCATGAACGCTATTGCGGTTGCCATCGCTGCTTCGATGCTGAGTTTTGCGATGGGTTTCGCGA
TCAGGCGGGGGACGGTCTGC

Downstream 100 bases:

>100_bases
AAACCATGCCCACGGGCCAACTGTTTTTGCGCGCTCGATGCGCGCAATATGCGCATCGTGTAATCAGGAAGGGACAGCGG
GATGACCGATTTCGACTATG

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 299; Mature: 299

Protein sequence:

>299_residues
MVVAAQDLVVRRRPDKFIGFATAACWSGLLLVPLAWTAPAVFHLSPGYDQLIQAFLFGCLYGIGAWANQACGFGTLAHLT
GGRLGYLLTLAGWVIGASFISKVYRPQQIPEPSLLATSPLAAIAAWLAFAAVCWWSWPRLRLLRRRSRWRKMLLGRARMR
PFEAMLIIGIGGGLLYACAGSWTYLGLLSSYASQLVMHDFAPISPLPALLGTAMMIGGGLFAAVRSASFRLRGTNWRQGS
RHLVGGTIMGLATQLIPGGNGVIIVYGLPSFAPHALTAYFGMTLTLMLIFAATNYSRRA

Sequences:

>Translated_299_residues
MVVAAQDLVVRRRPDKFIGFATAACWSGLLLVPLAWTAPAVFHLSPGYDQLIQAFLFGCLYGIGAWANQACGFGTLAHLT
GGRLGYLLTLAGWVIGASFISKVYRPQQIPEPSLLATSPLAAIAAWLAFAAVCWWSWPRLRLLRRRSRWRKMLLGRARMR
PFEAMLIIGIGGGLLYACAGSWTYLGLLSSYASQLVMHDFAPISPLPALLGTAMMIGGGLFAAVRSASFRLRGTNWRQGS
RHLVGGTIMGLATQLIPGGNGVIIVYGLPSFAPHALTAYFGMTLTLMLIFAATNYSRRA
>Mature_299_residues
MVVAAQDLVVRRRPDKFIGFATAACWSGLLLVPLAWTAPAVFHLSPGYDQLIQAFLFGCLYGIGAWANQACGFGTLAHLT
GGRLGYLLTLAGWVIGASFISKVYRPQQIPEPSLLATSPLAAIAAWLAFAAVCWWSWPRLRLLRRRSRWRKMLLGRARMR
PFEAMLIIGIGGGLLYACAGSWTYLGLLSSYASQLVMHDFAPISPLPALLGTAMMIGGGLFAAVRSASFRLRGTNWRQGS
RHLVGGTIMGLATQLIPGGNGVIIVYGLPSFAPHALTAYFGMTLTLMLIFAATNYSRRA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 32351; Mature: 32351

Theoretical pI: Translated: 11.30; Mature: 11.30

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
5.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVVAAQDLVVRRRPDKFIGFATAACWSGLLLVPLAWTAPAVFHLSPGYDQLIQAFLFGCL
CEEECHHHHHHCCCCHHHHHHHHHHHCCHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHH
YGIGAWANQACGFGTLAHLTGGRLGYLLTLAGWVIGASFISKVYRPQQIPEPSLLATSPL
HHHHHHHHCCCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHCCHH
AAIAAWLAFAAVCWWSWPRLRLLRRRSRWRKMLLGRARMRPFEAMLIIGIGGGLLYACAG
HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCHHHHHHCC
SWTYLGLLSSYASQLVMHDFAPISPLPALLGTAMMIGGGLFAAVRSASFRLRGTNWRQGS
CHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCEEECCCCCCCCC
RHLVGGTIMGLATQLIPGGNGVIIVYGLPSFAPHALTAYFGMTLTLMLIFAATNYSRRA
CEEHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MVVAAQDLVVRRRPDKFIGFATAACWSGLLLVPLAWTAPAVFHLSPGYDQLIQAFLFGCL
CEEECHHHHHHCCCCHHHHHHHHHHHCCHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHH
YGIGAWANQACGFGTLAHLTGGRLGYLLTLAGWVIGASFISKVYRPQQIPEPSLLATSPL
HHHHHHHHCCCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHCCHH
AAIAAWLAFAAVCWWSWPRLRLLRRRSRWRKMLLGRARMRPFEAMLIIGIGGGLLYACAG
HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCHHHHHHCC
SWTYLGLLSSYASQLVMHDFAPISPLPALLGTAMMIGGGLFAAVRSASFRLRGTNWRQGS
CHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCEEECCCCCCCCC
RHLVGGTIMGLATQLIPGGNGVIIVYGLPSFAPHALTAYFGMTLTLMLIFAATNYSRRA
CEEHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA