| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is 103485608
Identifier: 103485608
GI number: 103485608
Start: 109889
End: 110170
Strand: Direct
Name: 103485608
Synonym: Sala_0111
Alternate gene names: NA
Gene position: 109889-110170 (Clockwise)
Preceding gene: 103485607
Following gene: 103485609
Centisome position: 3.29
GC content: 57.8
Gene sequence:
>282_bases TTGGTCTCAGCAGTTTGGAACGACACCACCATCGCCGCAAGCGACGAGACAATCGTCGTCGAGGGAAACCACTATTTCCC ACCTTCCGCGGTCAATCAGGAGCTCCTTGAAGCGAGCGCACACACTTCTGTCTGCCCGATCAAGGGCACCGCGAGATACT TCCATATCCGCGTAGGCAGCGCGCTCAACGCGGACGCGGCTTGGTCATATCCCGATCCGAATCCGGTTGCGGAAGCCATC CGGGATCACATCGCTTTCTGGAAAGGCGTAGAGGTTGGATAG
Upstream 100 bases:
>100_bases TGCGCCGACGGCGGCCAAGGCACCGTCGCACTCCTCGAACGCCCCTGATTCACGGGCCGCTGCGAACGCCGTGCCATTGA CAATATGAGAGGATATTCCG
Downstream 100 bases:
>100_bases CAGCCAAGGCGCAGCGGGCCTTCGCTGATGGCTGTGTCGCTTCATGCGCGCATCCTTGATCATCTCGCGCGGGTAATTGG CGATCTGCAGGTGGCGGGGG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 93; Mature: 93
Protein sequence:
>93_residues MVSAVWNDTTIAASDETIVVEGNHYFPPSAVNQELLEASAHTSVCPIKGTARYFHIRVGSALNADAAWSYPDPNPVAEAI RDHIAFWKGVEVG
Sequences:
>Translated_93_residues MVSAVWNDTTIAASDETIVVEGNHYFPPSAVNQELLEASAHTSVCPIKGTARYFHIRVGSALNADAAWSYPDPNPVAEAI RDHIAFWKGVEVG >Mature_93_residues MVSAVWNDTTIAASDETIVVEGNHYFPPSAVNQELLEASAHTSVCPIKGTARYFHIRVGSALNADAAWSYPDPNPVAEAI RDHIAFWKGVEVG
Specific function: Unknown
COG id: COG2343
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 10052; Mature: 10052
Theoretical pI: Translated: 4.67; Mature: 4.67
Prosite motif: PS00430 TONB_DEPENDENT_REC_1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 1.1 %Met (Translated Protein) 2.2 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 1.1 %Met (Mature Protein) 2.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MVSAVWNDTTIAASDETIVVEGNHYFPPSAVNQELLEASAHTSVCPIKGTARYFHIRVGS CCCCCCCCEEEECCCCEEEEECCCCCCCCHHHHHHHHHCCCCCCCCCCCCCEEEEEEECC ALNADAAWSYPDPNPVAEAIRDHIAFWKGVEVG CCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCC >Mature Secondary Structure MVSAVWNDTTIAASDETIVVEGNHYFPPSAVNQELLEASAHTSVCPIKGTARYFHIRVGS CCCCCCCCEEEECCCCEEEEECCCCCCCCHHHHHHHHHCCCCCCCCCCCCCEEEEEEECC ALNADAAWSYPDPNPVAEAIRDHIAFWKGVEVG CCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA