Definition Sphingopyxis alaskensis RB2256, complete genome.
Accession NC_008048
Length 3,345,170

Click here to switch to the map view.

The map label for this gene is yfjQ [H]

Identifier: 103485595

GI number: 103485595

Start: 100205

End: 101173

Strand: Direct

Name: yfjQ [H]

Synonym: Sala_0098

Alternate gene names: 103485595

Gene position: 100205-101173 (Clockwise)

Preceding gene: 103485594

Following gene: 103485596

Centisome position: 3.0

GC content: 58.2

Gene sequence:

>969_bases
ATGAGCGTCATCGCTGCTTATTATTACAACAAGGGCCTGCGGGTCCGCGAAATCGCGATCGACGAGCAGGTCCAGCTCGA
TAAGGATCGCTCCGGCTTTTGCTGGATCGCGCTTCGCGAGCCCACCGCCGACGAGCTTAAAGCGATCCAAACGACGTATA
ACCTCCATCCGTTGGCAATCGACAACGCGATGCACCCGCTCTGCCCGCCCAAGCTCGAAGCGTATAATGAAGAGCTCTAT
GTTGTCGCTCAGACCGCCGAGCTGGATGGAGACCAGATCCGCTACGGCAAGATGGCGATCTTCACCGGTCACAACCATCT
CATCAGCGTACGGCACGGCAACGGCGGAGCGCTCGGCAATCTTCGCGAGCAACTCGAGGCTTCGCCGGCGCTTTTTGGCA
AAGGTGTCGACTATGTGCTGCATGCGATCCTGCACCGGATCGTCGATCAATATCTTCCCATCTTCGAGATGATCGAGGAT
GACGTTCTGGCGATGGAGAGACGATCGCTCGACGACTTTCTCGGACGGGCAGAAATCGACCGCATCTTCGGGCTGAGAAG
CGAACTCACGCGCTTCCAGCGCACGCTCGGCGCTATGGCTGAACTGGTCCGGAAACTCGTCCGAGGCCATTTCCCCTGCA
TCAGTTCAGAAGTCAGACCCTATTTCAGCGACGTCGCGGATCATGTCGCTCGCGTGCAGACCATGGTCGATGGCCTCCTG
CAGGTTCTGTCCACCGTCTTCGAGTTCAGCAGCCTGTTGGAAGCGCAAAGAACGGGCGTGACCACGCGCCAGCTCGCGGC
CTGGGCCGCCATATTGGCGGTCCCGACGGCCATCGCCGGGATATATGGCATGAACTTCAGGAACATGCCCGAGCTGGACA
CGGTCTATGGCTATTTTGTCGTGCTCGGGTTGATGACGATGTTCTGCCTGTACCTGTTCGTGCGGTTCAAGAAGGCCAAG
TGGATATGA

Upstream 100 bases:

>100_bases
TCCTCGGCCTCGGCGAATATTCGAACGTCCAGACATGGCTCCGCCGCGGGCTGGCGCGGCCCGCGGTGCAGCGCGGCCTG
CGCATCCCTGCGAGACCGGC

Downstream 100 bases:

>100_bases
ATAGCGCGCGTTTGCTTTTCATCTCCGTCAGCTGAGCCGCAACAGCCTCCCTGATATTAGAGCATGTCCAATGCCATGCA
AAGCCAAGGTGCAACAATGA

Product: Mg2+ transporter protein, CorA-like protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 322; Mature: 321

Protein sequence:

>322_residues
MSVIAAYYYNKGLRVREIAIDEQVQLDKDRSGFCWIALREPTADELKAIQTTYNLHPLAIDNAMHPLCPPKLEAYNEELY
VVAQTAELDGDQIRYGKMAIFTGHNHLISVRHGNGGALGNLREQLEASPALFGKGVDYVLHAILHRIVDQYLPIFEMIED
DVLAMERRSLDDFLGRAEIDRIFGLRSELTRFQRTLGAMAELVRKLVRGHFPCISSEVRPYFSDVADHVARVQTMVDGLL
QVLSTVFEFSSLLEAQRTGVTTRQLAAWAAILAVPTAIAGIYGMNFRNMPELDTVYGYFVVLGLMTMFCLYLFVRFKKAK
WI

Sequences:

>Translated_322_residues
MSVIAAYYYNKGLRVREIAIDEQVQLDKDRSGFCWIALREPTADELKAIQTTYNLHPLAIDNAMHPLCPPKLEAYNEELY
VVAQTAELDGDQIRYGKMAIFTGHNHLISVRHGNGGALGNLREQLEASPALFGKGVDYVLHAILHRIVDQYLPIFEMIED
DVLAMERRSLDDFLGRAEIDRIFGLRSELTRFQRTLGAMAELVRKLVRGHFPCISSEVRPYFSDVADHVARVQTMVDGLL
QVLSTVFEFSSLLEAQRTGVTTRQLAAWAAILAVPTAIAGIYGMNFRNMPELDTVYGYFVVLGLMTMFCLYLFVRFKKAK
WI
>Mature_321_residues
SVIAAYYYNKGLRVREIAIDEQVQLDKDRSGFCWIALREPTADELKAIQTTYNLHPLAIDNAMHPLCPPKLEAYNEELYV
VAQTAELDGDQIRYGKMAIFTGHNHLISVRHGNGGALGNLREQLEASPALFGKGVDYVLHAILHRIVDQYLPIFEMIEDD
VLAMERRSLDDFLGRAEIDRIFGLRSELTRFQRTLGAMAELVRKLVRGHFPCISSEVRPYFSDVADHVARVQTMVDGLLQ
VLSTVFEFSSLLEAQRTGVTTRQLAAWAAILAVPTAIAGIYGMNFRNMPELDTVYGYFVVLGLMTMFCLYLFVRFKKAKW
I

Specific function: Unknown

COG id: COG0598

COG function: function code P; Mg2+ and Co2+ transporters

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CorA metal ion transporter (MIT) (TC 1.A.35) family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004488
- InterPro:   IPR002523 [H]

Pfam domain/function: PF01544 CorA [H]

EC number: NA

Molecular weight: Translated: 36472; Mature: 36341

Theoretical pI: Translated: 6.42; Mature: 6.42

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSVIAAYYYNKGLRVREIAIDEQVQLDKDRSGFCWIALREPTADELKAIQTTYNLHPLAI
CCEEEEEHHCCCCEEEEEECCCHHHCCCCCCCEEEEEECCCCHHHHHHHHHHCCCCCEEE
DNAMHPLCPPKLEAYNEELYVVAQTAELDGDQIRYGKMAIFTGHNHLISVRHGNGGALGN
CCCCCCCCCCHHHHCCCCEEEEEEECCCCCCEEEECCEEEEECCCEEEEEEECCCCCHHH
LREQLEASPALFGKGVDYVLHAILHRIVDQYLPIFEMIEDDVLAMERRSLDDFLGRAEID
HHHHHHCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RIFGLRSELTRFQRTLGAMAELVRKLVRGHFPCISSEVRPYFSDVADHVARVQTMVDGLL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
QVLSTVFEFSSLLEAQRTGVTTRQLAAWAAILAVPTAIAGIYGMNFRNMPELDTVYGYFV
HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHH
VLGLMTMFCLYLFVRFKKAKWI
HHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
SVIAAYYYNKGLRVREIAIDEQVQLDKDRSGFCWIALREPTADELKAIQTTYNLHPLAI
CEEEEEHHCCCCEEEEEECCCHHHCCCCCCCEEEEEECCCCHHHHHHHHHHCCCCCEEE
DNAMHPLCPPKLEAYNEELYVVAQTAELDGDQIRYGKMAIFTGHNHLISVRHGNGGALGN
CCCCCCCCCCHHHHCCCCEEEEEEECCCCCCEEEECCEEEEECCCEEEEEEECCCCCHHH
LREQLEASPALFGKGVDYVLHAILHRIVDQYLPIFEMIEDDVLAMERRSLDDFLGRAEID
HHHHHHCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RIFGLRSELTRFQRTLGAMAELVRKLVRGHFPCISSEVRPYFSDVADHVARVQTMVDGLL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
QVLSTVFEFSSLLEAQRTGVTTRQLAAWAAILAVPTAIAGIYGMNFRNMPELDTVYGYFV
HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHH
VLGLMTMFCLYLFVRFKKAKWI
HHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8969503; 9384377 [H]