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The map label for this gene is yjgJ [H]

Identifier: 103485582

GI number: 103485582

Start: 89025

End: 89618

Strand: Reverse

Name: yjgJ [H]

Synonym: Sala_0084

Alternate gene names: 103485582

Gene position: 89618-89025 (Counterclockwise)

Preceding gene: 103485584

Following gene: 103485581

Centisome position: 2.68

GC content: 63.3

Gene sequence:

>594_bases
ATGGTTACTACAAATAGATCCCGCACGCGTGGCCGTCCACGTAAGTTCGATCCCGAGGCAGCGGTGGCGACTGCGCAGCA
ACTTTTCCATGAACGCGGTTATGACGCCGTCAGCGTCGCCGATGTCACCGACGCGCTCGGCATCAATCCGCCAAGCTTTT
ACGCCGCTTTCGGCAGCAAAGCCGGACTTTACCAGCGCGTGCTCGATTATTGGACGGACACCGAAGCGATTCCGCTCGCG
GACATTCTGCGTCCCGACGTCCCCGTCGCCGATGCCGTTGCGGCTATGCTGGAGGAGGCCGCGCGTCGCTATGCGTTCAA
CCCGGCGGCAGGCGGGTGCCTTGTACTCGAAGGCACGCGTTGCAACGACGACGATGCGCGCGAAGCCGCTCGCGCGCTCA
ACCTCGGTGCGGAAACGTTCATCCATGACTATATCGCGGCGCGCCATCCGGAGGCGGCCGATCAAGTGACCGATTTTGTC
GCCACGACGATGTCCGGGCTTTCGGCAAAGGCGCGAAGCGGACACGACCTATCGCGCCTCCTCGCTACAGCGCGGCTTGC
AGGCAGCGTTCTCACGCAGGTGCTGCCGGCTTGA

Upstream 100 bases:

>100_bases
AACGGATTTTCCTTGAAAGTTGGACATCGGGAGACTCCTTGCTTATTAATGTATCGTCCACTACATAATATCGCGAAAGC
CATCGTCAAGGCATTTTGTA

Downstream 100 bases:

>100_bases
TAGCAGCATGATCAGAAGGTGGTGAATAACCGGCCGATTAGAGCTAGCACGATTGACCGAAGATGCCCCTGATGCGCCCT
GTGGACAGTACTGGCCGATT

Product: TetR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 197; Mature: 197

Protein sequence:

>197_residues
MVTTNRSRTRGRPRKFDPEAAVATAQQLFHERGYDAVSVADVTDALGINPPSFYAAFGSKAGLYQRVLDYWTDTEAIPLA
DILRPDVPVADAVAAMLEEAARRYAFNPAAGGCLVLEGTRCNDDDAREAARALNLGAETFIHDYIAARHPEAADQVTDFV
ATTMSGLSAKARSGHDLSRLLATARLAGSVLTQVLPA

Sequences:

>Translated_197_residues
MVTTNRSRTRGRPRKFDPEAAVATAQQLFHERGYDAVSVADVTDALGINPPSFYAAFGSKAGLYQRVLDYWTDTEAIPLA
DILRPDVPVADAVAAMLEEAARRYAFNPAAGGCLVLEGTRCNDDDAREAARALNLGAETFIHDYIAARHPEAADQVTDFV
ATTMSGLSAKARSGHDLSRLLATARLAGSVLTQVLPA
>Mature_197_residues
MVTTNRSRTRGRPRKFDPEAAVATAQQLFHERGYDAVSVADVTDALGINPPSFYAAFGSKAGLYQRVLDYWTDTEAIPLA
DILRPDVPVADAVAAMLEEAARRYAFNPAAGGCLVLEGTRCNDDDAREAARALNLGAETFIHDYIAARHPEAADQVTDFV
ATTMSGLSAKARSGHDLSRLLATARLAGSVLTQVLPA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH tetR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87082397, Length=195, Percent_Identity=58.4615384615385, Blast_Score=234, Evalue=3e-63,
Organism=Escherichia coli, GI87081833, Length=196, Percent_Identity=28.5714285714286, Blast_Score=82, Evalue=2e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR015893
- InterPro:   IPR011075
- InterPro:   IPR001647 [H]

Pfam domain/function: PF00440 TetR_N [H]

EC number: NA

Molecular weight: Translated: 21092; Mature: 21092

Theoretical pI: Translated: 5.28; Mature: 5.28

Prosite motif: PS01081 HTH_TETR_1 ; PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVTTNRSRTRGRPRKFDPEAAVATAQQLFHERGYDAVSVADVTDALGINPPSFYAAFGSK
CCCCCCCHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCHHHHHHHCCC
AGLYQRVLDYWTDTEAIPLADILRPDVPVADAVAAMLEEAARRYAFNPAAGGCLVLEGTR
HHHHHHHHHHHCCCCCCCHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCC
CNDDDAREAARALNLGAETFIHDYIAARHPEAADQVTDFVATTMSGLSAKARSGHDLSRL
CCCHHHHHHHHHHHCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH
LATARLAGSVLTQVLPA
HHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MVTTNRSRTRGRPRKFDPEAAVATAQQLFHERGYDAVSVADVTDALGINPPSFYAAFGSK
CCCCCCCHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCHHHHHHHCCC
AGLYQRVLDYWTDTEAIPLADILRPDVPVADAVAAMLEEAARRYAFNPAAGGCLVLEGTR
HHHHHHHHHHHCCCCCCCHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCC
CNDDDAREAARALNLGAETFIHDYIAARHPEAADQVTDFVATTMSGLSAKARSGHDLSRL
CCCHHHHHHHHHHHCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH
LATARLAGSVLTQVLPA
HHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7610040; 9278503 [H]