| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is 103485574
Identifier: 103485574
GI number: 103485574
Start: 82625
End: 83080
Strand: Reverse
Name: 103485574
Synonym: Sala_0076
Alternate gene names: NA
Gene position: 83080-82625 (Counterclockwise)
Preceding gene: 103485575
Following gene: 103485573
Centisome position: 2.48
GC content: 65.57
Gene sequence:
>456_bases ATGCCCAGACAAATGAAATACGCCCTAGCGCTTTTGGTCGCATTCGCCTTCGCCGCGCCCGCTTCCGCGCAGACCGCACG AGACATCGTCGGGCCCGCTGGCGTCGTCCCTTGGAGCGCACCGCAACTGCCAGCGCGGATCATCGTCGACCCTCCGCTTC CCGGCCCTCTCGCCCGCGGCCAAGTCTTCATCCAGTATCGTGCCGACAATCTGCGAATCCAGCCGGTGTTCGGTCCGAAC GCGCTCGATGTCTCACCGCGCATCGGCCATATCCACGTCACCGTCGATCGCGCGCCTTGGCACTGGGCCGACGCCAGCGG CGAACCGGTCATTCTGGTTGGGTTACCGCCCGGCCCGCACGAGGTCGAGTTCATCCTCGCCGATGCGAACCACATGCCGC TCGATCGCGCGGTTGTCGCGTTCACCGTGCCGGCGACAACCACACCGCATCATTGA
Upstream 100 bases:
>100_bases CTCGACGTTTGATGGGTTGGGTAGCTTTCGGCGCCCTTGCATTTCCCATGCTGACGATCCGGCAGCATCGGGCGCGTCGC GCGCCCACTGGAGACCTTCG
Downstream 100 bases:
>100_bases TCCAAACCGCCGATCCCCTTGGGCAAACCAAAAAAGGATATCATCATGACCGATCATAGCGACACCGATCGCAGGCTTTT CCTCCAGACGGCCGGGCTTG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 151; Mature: 150
Protein sequence:
>151_residues MPRQMKYALALLVAFAFAAPASAQTARDIVGPAGVVPWSAPQLPARIIVDPPLPGPLARGQVFIQYRADNLRIQPVFGPN ALDVSPRIGHIHVTVDRAPWHWADASGEPVILVGLPPGPHEVEFILADANHMPLDRAVVAFTVPATTTPHH
Sequences:
>Translated_151_residues MPRQMKYALALLVAFAFAAPASAQTARDIVGPAGVVPWSAPQLPARIIVDPPLPGPLARGQVFIQYRADNLRIQPVFGPN ALDVSPRIGHIHVTVDRAPWHWADASGEPVILVGLPPGPHEVEFILADANHMPLDRAVVAFTVPATTTPHH >Mature_150_residues PRQMKYALALLVAFAFAAPASAQTARDIVGPAGVVPWSAPQLPARIIVDPPLPGPLARGQVFIQYRADNLRIQPVFGPNA LDVSPRIGHIHVTVDRAPWHWADASGEPVILVGLPPGPHEVEFILADANHMPLDRAVVAFTVPATTTPHH
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 16198; Mature: 16067
Theoretical pI: Translated: 7.26; Mature: 7.26
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 2.0 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 1.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPRQMKYALALLVAFAFAAPASAQTARDIVGPAGVVPWSAPQLPARIIVDPPLPGPLARG CCCHHHHHHHHHHHHHHCCCCCCCHHHHHCCCCCCCCCCCCCCCEEEEECCCCCCCCCCC QVFIQYRADNLRIQPVFGPNALDVSPRIGHIHVTVDRAPWHWADASGEPVILVGLPPGPH EEEEEEECCCEEEEEEECCCCEECCCCCEEEEEEEECCCCEECCCCCCEEEEEECCCCCC EVEFILADANHMPLDRAVVAFTVPATTTPHH EEEEEEECCCCCCCCCEEEEEEECCCCCCCC >Mature Secondary Structure PRQMKYALALLVAFAFAAPASAQTARDIVGPAGVVPWSAPQLPARIIVDPPLPGPLARG CCHHHHHHHHHHHHHHCCCCCCCHHHHHCCCCCCCCCCCCCCCEEEEECCCCCCCCCCC QVFIQYRADNLRIQPVFGPNALDVSPRIGHIHVTVDRAPWHWADASGEPVILVGLPPGPH EEEEEEECCCEEEEEEECCCCEECCCCCEEEEEEEECCCCEECCCCCCEEEEEECCCCCC EVEFILADANHMPLDRAVVAFTVPATTTPHH EEEEEEECCCCCCCCCEEEEEEECCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA