Definition Sphingopyxis alaskensis RB2256, complete genome.
Accession NC_008048
Length 3,345,170

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The map label for this gene is dipZ [H]

Identifier: 103485572

GI number: 103485572

Start: 80291

End: 81436

Strand: Reverse

Name: dipZ [H]

Synonym: Sala_0074

Alternate gene names: 103485572

Gene position: 81436-80291 (Counterclockwise)

Preceding gene: 103485573

Following gene: 103485571

Centisome position: 2.43

GC content: 63.53

Gene sequence:

>1146_bases
TTGAAGGGCTGGCACGCATCAGAAGGAAATAGGTCAATGCTACGCAAAAGACGCGGTTTGGGATTTGCGGCGATCGCGGT
TACCGCGGCGATCGGCGCGGTCGTCTATTGCTTCGGCGACATACCGGGCGGCCGCTTGAACCCGACGCCCAGCCCGATCC
CGAGCGCCGCCGCCGCCGAATATCCCGGCCAGCCGCTTGTGGCCCTTGCCGGCAACGGTCCCTGGCTCAACACGACTGAG
CGCACGCCGCAGGCACTGCGCGGCAAAGTCGTTCTTGTCAATTTCTGGACCTATTCGTGCATAAACTCGCTGCGGCCCCT
GCCCTATATTCGCGACTGGGCCGCGAAGTATAAAGACGACGGTCTGATCGTCATCGGTGTCCACACACCCGAATTCGCTT
TCGAAAAGGATGGTGACAAGGTCCGACGCGCCGTGGCGGAACTCGGCGTCACCTGGCCGGTCAAGCTCGACAGCGACTAT
GCGACCTGGAGGCTGTTCGGCAACGACGGCTGGCCAGGATTCTATTTCATCGATGCCAAAGGCCAGGTCCGCCACCATCG
TCTCGGCGAGGGCGATTATGCGGCGTCCGAACGGCTGCTCCAGCAACTCCTCGCCGAAGCCAAGGCTGCGCCAATCAATG
AAAAACTGACTGGCGACATCGGCAAGGGGATAGAGGCGGCTCCCGATTGGGACCAACTGCGCTCGCCCGAGACCTATGTC
GGATACCGACAGGCCGACCGCCTCGCCGCGCCGCAACGGTTGAAGCGGGACGCTCCCCTCACCTATAGCCTTCCCTCTTC
CGTCCCGGCCAACCAATGGGGCTTGGGCGGAGCATGGACCGTCGGCGCCGAGTCCGCACGCGCCGACGCCGCGTCGGCGA
AGATACGCTATCGCTTCGAGGCGCGTGACCTGCACATGGTCCTCGGCGCGCGCGGCGACGGAACACCCGCCCGCTTCCGC
GTGACGCTCGATGGTTTGCCGCCCGGAACAGATCATGGTGTGGATACCGATGCGAACGGCATGGGCACCGTTACCAAGGA
CAGGCTCTACCAGCTCGTTCGCCAGTCCGCGGCCGTCAGAGCCCGGACATTCGAGATCGAATTCCTCGACCCCGGTGCTC
GCGCCTATGTCTTCACCTTTGGATAG

Upstream 100 bases:

>100_bases
TCCGGCATGACAAGCGGAACGTCGAACGCAAAGAATGTAACGTCCCTGCCCTCGCAACCGAAACGCACAGGCGCGGGGAA
CGCAGCCGCATGTCCGGCCC

Downstream 100 bases:

>100_bases
CTGTCGGTCTTGGCCGATCGTGGACAGTCTGGACCCTGCCTAAATATGCGCTGAAGCAGCCGCCGAGCCGAGCGCCGGGG
ACCGAATTGGCGTCTCCATA

Product: thioredoxin-like protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 381; Mature: 381

Protein sequence:

>381_residues
MKGWHASEGNRSMLRKRRGLGFAAIAVTAAIGAVVYCFGDIPGGRLNPTPSPIPSAAAAEYPGQPLVALAGNGPWLNTTE
RTPQALRGKVVLVNFWTYSCINSLRPLPYIRDWAAKYKDDGLIVIGVHTPEFAFEKDGDKVRRAVAELGVTWPVKLDSDY
ATWRLFGNDGWPGFYFIDAKGQVRHHRLGEGDYAASERLLQQLLAEAKAAPINEKLTGDIGKGIEAAPDWDQLRSPETYV
GYRQADRLAAPQRLKRDAPLTYSLPSSVPANQWGLGGAWTVGAESARADAASAKIRYRFEARDLHMVLGARGDGTPARFR
VTLDGLPPGTDHGVDTDANGMGTVTKDRLYQLVRQSAAVRARTFEIEFLDPGARAYVFTFG

Sequences:

>Translated_381_residues
MKGWHASEGNRSMLRKRRGLGFAAIAVTAAIGAVVYCFGDIPGGRLNPTPSPIPSAAAAEYPGQPLVALAGNGPWLNTTE
RTPQALRGKVVLVNFWTYSCINSLRPLPYIRDWAAKYKDDGLIVIGVHTPEFAFEKDGDKVRRAVAELGVTWPVKLDSDY
ATWRLFGNDGWPGFYFIDAKGQVRHHRLGEGDYAASERLLQQLLAEAKAAPINEKLTGDIGKGIEAAPDWDQLRSPETYV
GYRQADRLAAPQRLKRDAPLTYSLPSSVPANQWGLGGAWTVGAESARADAASAKIRYRFEARDLHMVLGARGDGTPARFR
VTLDGLPPGTDHGVDTDANGMGTVTKDRLYQLVRQSAAVRARTFEIEFLDPGARAYVFTFG
>Mature_381_residues
MKGWHASEGNRSMLRKRRGLGFAAIAVTAAIGAVVYCFGDIPGGRLNPTPSPIPSAAAAEYPGQPLVALAGNGPWLNTTE
RTPQALRGKVVLVNFWTYSCINSLRPLPYIRDWAAKYKDDGLIVIGVHTPEFAFEKDGDKVRRAVAELGVTWPVKLDSDY
ATWRLFGNDGWPGFYFIDAKGQVRHHRLGEGDYAASERLLQQLLAEAKAAPINEKLTGDIGKGIEAAPDWDQLRSPETYV
GYRQADRLAAPQRLKRDAPLTYSLPSSVPANQWGLGGAWTVGAESARADAASAKIRYRFEARDLHMVLGARGDGTPARFR
VTLDGLPPGTDHGVDTDANGMGTVTKDRLYQLVRQSAAVRARTFEIEFLDPGARAYVFTFG

Specific function: Unknown

COG id: COG0526

COG function: function code OC; Thiol-disulfide isomerase and thioredoxins

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 thioredoxin domain [H]

Homologues:

Organism=Homo sapiens, GI42476013, Length=120, Percent_Identity=35.8333333333333, Blast_Score=86, Evalue=5e-17,
Organism=Drosophila melanogaster, GI116007528, Length=127, Percent_Identity=29.9212598425197, Blast_Score=77, Evalue=2e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000866
- InterPro:   IPR003834
- InterPro:   IPR017936
- InterPro:   IPR012336
- InterPro:   IPR012335 [H]

Pfam domain/function: PF00578 AhpC-TSA; PF02683 DsbD [H]

EC number: NA

Molecular weight: Translated: 41584; Mature: 41584

Theoretical pI: Translated: 9.47; Mature: 9.47

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKGWHASEGNRSMLRKRRGLGFAAIAVTAAIGAVVYCFGDIPGGRLNPTPSPIPSAAAAE
CCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHEEEECCCCCCCCCCCCCCCCCCHHHC
YPGQPLVALAGNGPWLNTTERTPQALRGKVVLVNFWTYSCINSLRPLPYIRDWAAKYKDD
CCCCCEEEEECCCCCCCCCCCCHHHHCCCEEEEEEHHHHHHHHCCCCCHHHHHHHHHCCC
GLIVIGVHTPEFAFEKDGDKVRRAVAELGVTWPVKLDSDYATWRLFGNDGWPGFYFIDAK
CEEEEEECCCCCCCCCCCHHHHHHHHHCCCEEEEEECCCCEEEEEEECCCCCEEEEEECC
GQVRHHRLGEGDYAASERLLQQLLAEAKAAPINEKLTGDIGKGIEAAPDWDQLRSPETYV
CCCHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHCCCCHHC
GYRQADRLAAPQRLKRDAPLTYSLPSSVPANQWGLGGAWTVGAESARADAASAKIRYRFE
CHHHHHHHCCHHHHHCCCCEEEECCCCCCCCCCCCCCEEECCCCHHCCCCCCCEEEEEEE
ARDLHMVLGARGDGTPARFRVTLDGLPPGTDHGVDTDANGMGTVTKDRLYQLVRQSAAVR
CCCEEEEEECCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHE
ARTFEIEFLDPGARAYVFTFG
EEEEEEEEECCCCEEEEEEEC
>Mature Secondary Structure
MKGWHASEGNRSMLRKRRGLGFAAIAVTAAIGAVVYCFGDIPGGRLNPTPSPIPSAAAAE
CCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHEEEECCCCCCCCCCCCCCCCCCHHHC
YPGQPLVALAGNGPWLNTTERTPQALRGKVVLVNFWTYSCINSLRPLPYIRDWAAKYKDD
CCCCCEEEEECCCCCCCCCCCCHHHHCCCEEEEEEHHHHHHHHCCCCCHHHHHHHHHCCC
GLIVIGVHTPEFAFEKDGDKVRRAVAELGVTWPVKLDSDYATWRLFGNDGWPGFYFIDAK
CEEEEEECCCCCCCCCCCHHHHHHHHHCCCEEEEEECCCCEEEEEEECCCCCEEEEEECC
GQVRHHRLGEGDYAASERLLQQLLAEAKAAPINEKLTGDIGKGIEAAPDWDQLRSPETYV
CCCHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHCCCCHHC
GYRQADRLAAPQRLKRDAPLTYSLPSSVPANQWGLGGAWTVGAESARADAASAKIRYRFE
CHHHHHHHCCHHHHHCCCCEEEECCCCCCCCCCCCCCEEECCCCHHCCCCCCCEEEEEEE
ARDLHMVLGARGDGTPARFRVTLDGLPPGTDHGVDTDANGMGTVTKDRLYQLVRQSAAVR
CCCEEEEEECCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHE
ARTFEIEFLDPGARAYVFTFG
EEEEEEEEECCCCEEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 12788972 [H]