Definition Sphingopyxis alaskensis RB2256, complete genome.
Accession NC_008048
Length 3,345,170

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The map label for this gene is 103485565

Identifier: 103485565

GI number: 103485565

Start: 73686

End: 74876

Strand: Reverse

Name: 103485565

Synonym: Sala_0067

Alternate gene names: NA

Gene position: 74876-73686 (Counterclockwise)

Preceding gene: 103485566

Following gene: 103485564

Centisome position: 2.24

GC content: 66.83

Gene sequence:

>1191_bases
ATGCGCACCTCGCTCGAGGTCGCCGACGTCTTCCGTACTGCTGGACCCGCGTATCGCACCGCGCATGCCGGGCATCTGAG
CCTGCATCAGCTCAAGATCATGTCGGCGATCGAACATTGCCGCACCGCCGCCCTAGGTGGACACGTCGAGGCTTGCACCG
ACTGCGGGCATTGGCGGATCGCCTACAACAGTTGCCGCAACCGGCACTGCCCGCGGTGCCAGGGCGCTGCTGCACGCACC
TGGCTCGAGGCCCGCGAGGCCGACCTGCTCCCGGTCGGCTATTTCCACGTCGTCTTCACCCTCCCTGCCGAGGTCGCTGC
GATCGCCTTCACCAACAAGGCGCTGGTCTATGATCTTCTGTTCAAGGCCGCGGCCGATACGATGCTGACCATCGCCGCTG
ATCCCAAGCATCTCGGCGCCCGGATCGGCATCACCGCCGTCCTTCACACATGGGGATCCGCCCTCACCCATCATCCCCAC
ATCCACATGATCGTGCCGGGCGGCGGCATATCGCGCGATGGGACGCGCTGGATATCCGCACGCCCCGCCTTCCTGCTCCC
CGTGCGCGTGCTCGGCGCGCTTTTCCGCCGCCTGTTCCTGACCCGCCTTCGCGCGCTGCACGATGACGGCAAGCTCGCTT
TCTTTGGCAGCCTCACGCATTTTGCCGAACGACGAGCATTCCTGCGGCACCTCTCTCCCGTCAGGAAGAAGCGCTGGGTG
GTCTATGCCAAGCCGCCGTTCGCCGGGCCCGAAGCGGTGCTCGCCTATCTGTCGCGCTACACCCACCGGGTTGCGATATC
GAACAGCCGCCTCCTCCGCTTCGACGAGGCCGGGGTCACCTTCCGCTACAAGGATTATCGCCAGGGCGGCGCCAACCGCC
AGCAGGTCATGACCCTCGCCGCCGACGAGTTCATTCGCCGCTTCCTCCTCCACGCCCTGCCCCGCGGGTTCCACCGCATC
CGCCACTATGGGCTCCTCGCCAGCGCTAGGCGCAAGGATCATCTCGAACGCGCCCGCCGTCTGCTCAATGTCGCCCCCGC
GCCGGCCGACGATCTGCCCGCCGAGCTCGAAGCTCAGCCGCTGTGCCCGTGCTGCGGCGGCACCATGGCGATCATCGAGG
TCTTCGAACGTCGCTATCAACCCCGAGCGCCACCACCGCCCTCACTCTCATCCGGGACACAGGCGCCGTGA

Upstream 100 bases:

>100_bases
ACTTGCAGGTCGCAACGAAGACGACGCGCAAGGTGACCAGCCCGCTCGACAGGCTCGCGCTGGCATCGCCCATCGAGGAG
CCACCCGACGGCTGAGGCTG

Downstream 100 bases:

>100_bases
CCCGGCACGGCTCATCCACTCCCATACCCGGCGCAGCCCTGCGTCCGGAAGCGGACCCGCTTGCGCTCGCCCTGCCGAAA
AGCAGACGCCGCTATACTAA

Product: putative transposase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 396; Mature: 396

Protein sequence:

>396_residues
MRTSLEVADVFRTAGPAYRTAHAGHLSLHQLKIMSAIEHCRTAALGGHVEACTDCGHWRIAYNSCRNRHCPRCQGAAART
WLEAREADLLPVGYFHVVFTLPAEVAAIAFTNKALVYDLLFKAAADTMLTIAADPKHLGARIGITAVLHTWGSALTHHPH
IHMIVPGGGISRDGTRWISARPAFLLPVRVLGALFRRLFLTRLRALHDDGKLAFFGSLTHFAERRAFLRHLSPVRKKRWV
VYAKPPFAGPEAVLAYLSRYTHRVAISNSRLLRFDEAGVTFRYKDYRQGGANRQQVMTLAADEFIRRFLLHALPRGFHRI
RHYGLLASARRKDHLERARRLLNVAPAPADDLPAELEAQPLCPCCGGTMAIIEVFERRYQPRAPPPPSLSSGTQAP

Sequences:

>Translated_396_residues
MRTSLEVADVFRTAGPAYRTAHAGHLSLHQLKIMSAIEHCRTAALGGHVEACTDCGHWRIAYNSCRNRHCPRCQGAAART
WLEAREADLLPVGYFHVVFTLPAEVAAIAFTNKALVYDLLFKAAADTMLTIAADPKHLGARIGITAVLHTWGSALTHHPH
IHMIVPGGGISRDGTRWISARPAFLLPVRVLGALFRRLFLTRLRALHDDGKLAFFGSLTHFAERRAFLRHLSPVRKKRWV
VYAKPPFAGPEAVLAYLSRYTHRVAISNSRLLRFDEAGVTFRYKDYRQGGANRQQVMTLAADEFIRRFLLHALPRGFHRI
RHYGLLASARRKDHLERARRLLNVAPAPADDLPAELEAQPLCPCCGGTMAIIEVFERRYQPRAPPPPSLSSGTQAP
>Mature_396_residues
MRTSLEVADVFRTAGPAYRTAHAGHLSLHQLKIMSAIEHCRTAALGGHVEACTDCGHWRIAYNSCRNRHCPRCQGAAART
WLEAREADLLPVGYFHVVFTLPAEVAAIAFTNKALVYDLLFKAAADTMLTIAADPKHLGARIGITAVLHTWGSALTHHPH
IHMIVPGGGISRDGTRWISARPAFLLPVRVLGALFRRLFLTRLRALHDDGKLAFFGSLTHFAERRAFLRHLSPVRKKRWV
VYAKPPFAGPEAVLAYLSRYTHRVAISNSRLLRFDEAGVTFRYKDYRQGGANRQQVMTLAADEFIRRFLLHALPRGFHRI
RHYGLLASARRKDHLERARRLLNVAPAPADDLPAELEAQPLCPCCGGTMAIIEVFERRYQPRAPPPPSLSSGTQAP

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the transposase 32 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007069 [H]

Pfam domain/function: PF04986 Transposase_32 [H]

EC number: NA

Molecular weight: Translated: 44193; Mature: 44193

Theoretical pI: Translated: 10.71; Mature: 10.71

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.3 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
2.3 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRTSLEVADVFRTAGPAYRTAHAGHLSLHQLKIMSAIEHCRTAALGGHVEACTDCGHWRI
CCCCHHHHHHHHHCCCCHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCEEE
AYNSCRNRHCPRCQGAAARTWLEAREADLLPVGYFHVVFTLPAEVAAIAFTNKALVYDLL
EHHHHCCCCCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHH
FKAAADTMLTIAADPKHLGARIGITAVLHTWGSALTHHPHIHMIVPGGGISRDGTRWISA
HHHHHCCEEEEECCHHHHCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCEEECC
RPAFLLPVRVLGALFRRLFLTRLRALHDDGKLAFFGSLTHFAERRAFLRHLSPVRKKRWV
CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEHHHHHHHHHHHHHHHHCHHHHCCEE
VYAKPPFAGPEAVLAYLSRYTHRVAISNSRLLRFDEAGVTFRYKDYRQGGANRQQVMTLA
EEECCCCCCHHHHHHHHHHHHHHEEECCCEEEEEECCCCEEEEHHHHCCCCCHHHHHHHH
ADEFIRRFLLHALPRGFHRIRHYGLLASARRKDHLERARRLLNVAPAPADDLPAELEAQP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
LCPCCGGTMAIIEVFERRYQPRAPPPPSLSSGTQAP
CCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MRTSLEVADVFRTAGPAYRTAHAGHLSLHQLKIMSAIEHCRTAALGGHVEACTDCGHWRI
CCCCHHHHHHHHHCCCCHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCEEE
AYNSCRNRHCPRCQGAAARTWLEAREADLLPVGYFHVVFTLPAEVAAIAFTNKALVYDLL
EHHHHCCCCCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHH
FKAAADTMLTIAADPKHLGARIGITAVLHTWGSALTHHPHIHMIVPGGGISRDGTRWISA
HHHHHCCEEEEECCHHHHCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCEEECC
RPAFLLPVRVLGALFRRLFLTRLRALHDDGKLAFFGSLTHFAERRAFLRHLSPVRKKRWV
CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEHHHHHHHHHHHHHHHHCHHHHCCEE
VYAKPPFAGPEAVLAYLSRYTHRVAISNSRLLRFDEAGVTFRYKDYRQGGANRQQVMTLA
EEECCCCCCHHHHHHHHHHHHHHEEECCCEEEEEECCCCEEEEHHHHCCCCCHHHHHHHH
ADEFIRRFLLHALPRGFHRIRHYGLLASARRKDHLERARRLLNVAPAPADDLPAELEAQP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
LCPCCGGTMAIIEVFERRYQPRAPPPPSLSSGTQAP
CCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]