Halothiobacillus neapolitanus c2

Names | Halothiobacillus neapolitanus c2 |
---|---|
Accession numbers | NC_013422 |
Background | Halothiobacillus neapolitanus (strain ATCC 23641 / c2) is a sulfur oxidizing chemoautotrophic Gram-negative bacterium isolated from a sulfide-rich natural spa. This organism is able to tolerate high concentrations of sulfide and fixes CO(2) using a polyhedral body called a carboxysome which contains the primary carbon fixing enzyme, ribulose bisphosphate carboxylase/oxygenase. The carboxysome is a polyhedral "organelles," made up entirely of protein. It plays important roles in microbial CO(2) sequestration. H.neapolitanus is the model organism for structural and functional studies of carboxysomes and plays important roles in the global biogeochemical carbon and sulfur cycles by virtue of its ability to satisfy its carbon and energy needs entirely with inorganic compounds (CO(2) and reduced sulfur compounds, respectively). It is found in a range of different environments, some of which can be classified as "extreme", and has gained notoriety as a biological agent that promote corrosion of concrete, acidification of mine tailings, and bioleaching of low-grade ores. It is also being tested in a variety of bioremediation efforts. (Adaptated from http://genome.jgi-psf.org/halne/halne.home.html). (EBI Integr8) |
Taxonomy | |
Kingdom: | Bacteria |
Phylum: | Proteobacteria |
Class: | Gammaproteobacteria |
Order: | Chromatiales |
Family: | Halothiobacillaceae |
Genus: | Halothiobacillus |
Species: | neapolitanus |
Strain | c2 |
Complete | Yes |
Sequencing centre | (16-OCT-2009) US DOE Joint Genome Institute, 2800 Mitchell Drive B310, Walnut Creek, CA 94598-1698, USA (21-OCT-2009) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA |
Sequencing quality | Level 6: Finished |
Sequencing depth | NA |
Sequencing method | Sanger |
Isolation site | Disintegrated concrete in outfall sewer of Melbourne south east sewerage system, Australia |
Isolation country | Australia |
Number of replicons | 1 |
Gram staining properties | Negative |
Shape | Bacilli |
Mobility | Yes |
Flagellar presence | Yes |
Number of membranes | 2 |
Oxygen requirements | Aerobic |
Optimal temperature | 30.0 |
Temperature range | Mesophilic |
Habitat | Specialized |
Biotic relationship | Free living |
Host name | NA |
Cell arrangement | NA |
Sporulation | NA |
Metabolism | Carbon fixation Sulfur oxidizer |
Energy source | Chemolithoautotroph |
Diseases | NA |
Pathogenicity | No |
Glycolysis / Gluconeogenesis
Citrate cycle (TCA cycle)
Pentose phosphate pathway
Purine metabolism
Pyrimidine metabolism
Alanine, aspartate and glutamate metabolism
Glycine, serine and threonine metabolism
Cysteine and methionine metabolism
Valine, leucine and isoleucine biosynthesis
Lysine biosynthesis
Histidine metabolism
Phenylalanine, tyrosine and tryptophan biosynthesis
Selenocompound metabolism
D-Glutamine and D-glutamate metabolism
D-Arginine and D-ornithine metabolism
D-Alanine metabolism
Streptomycin biosynthesis
Lipopolysaccharide biosynthesis
Peptidoglycan biosynthesis
C5-Branched dibasic acid metabolism
One carbon pool by folate
Carbon fixation in photosynthetic organisms
Thiamine metabolism
Riboflavin metabolism
Vitamin B6 metabolism
Pantothenate and CoA biosynthesis
Biotin metabolism
Lipoic acid metabolism
Folate biosynthesis
Terpenoid backbone biosynthesis
Sulfur metabolism
Aminoacyl-tRNA biosynthesis
Citrate cycle (TCA cycle)
Pentose phosphate pathway
Purine metabolism
Pyrimidine metabolism
Alanine, aspartate and glutamate metabolism
Glycine, serine and threonine metabolism
Cysteine and methionine metabolism
Valine, leucine and isoleucine biosynthesis
Lysine biosynthesis
Histidine metabolism
Phenylalanine, tyrosine and tryptophan biosynthesis
Selenocompound metabolism
D-Glutamine and D-glutamate metabolism
D-Arginine and D-ornithine metabolism
D-Alanine metabolism
Streptomycin biosynthesis
Lipopolysaccharide biosynthesis
Peptidoglycan biosynthesis
C5-Branched dibasic acid metabolism
One carbon pool by folate
Carbon fixation in photosynthetic organisms
Thiamine metabolism
Riboflavin metabolism
Vitamin B6 metabolism
Pantothenate and CoA biosynthesis
Biotin metabolism
Lipoic acid metabolism
Folate biosynthesis
Terpenoid backbone biosynthesis
Sulfur metabolism
Aminoacyl-tRNA biosynthesis