Flavobacteriaceae bacterium 3519-10
Names | Flavobacteriaceae bacterium 3519-10 |
---|---|
Accession numbers | NC_013062 |
Background | Flavobacteriaceae bacterium (strain 3519-10) was isolated from glacial ice at a depth of 3519 m, just above the accreted ice from Subglacial Lake Vostok, the largest subglacial lake in Antarctica. Ice at this depth is near the bottom of a layer of deformed glacial ice and is more than 420,000 years old. It is less than 20 m above the layer of accretion ice originating from Subglacial Lake Vostok and has a temperature of approximately -8 degrees Celsius. This bacterium produces a 54 kDa ice-binding protein that is similar to ice-binding proteins previously found in sea ice diatoms, a snow mold, and a sea ice bacterium. The protein has the ability to inhibit the recrystallization of ice, a phenotype that has clear advantages for survival in ice (adapted from PMID 18622572). (EBI Integr8) |
Taxonomy | |
Kingdom: | Bacteria |
Phylum: | Bacteroidetes |
Class: | Flavobacteria |
Order: | Flavobacteriales |
Family: | Flavobacteriaceae |
Genus: | NA |
Species: | 3519-10 |
Strain | 3519 |
Complete | Yes |
Sequencing centre | (05-AUG-2009) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA (18-JUN-2009) School of Life Sciences, University of Nevada, 4505 Maryland Parkway, Las Vegas, NV 89154-4004, USA |
Sequencing quality | NA |
Sequencing depth | NA |
Sequencing method | NA |
Isolation site | NA |
Isolation country | NA |
Number of replicons | 1 |
Gram staining properties | NA |
Shape | NA |
Mobility | NA |
Flagellar presence | NA |
Number of membranes | 2 |
Oxygen requirements | NA |
Optimal temperature | NA |
Temperature range | NA |
Habitat | NA |
Biotic relationship | NA |
Host name | NA |
Cell arrangement | NA |
Sporulation | NA |
Metabolism | NA |
Energy source | NA |
Diseases | NA |
Pathogenicity | No |
Glycolysis / Gluconeogenesis
Citrate cycle (TCA cycle)
Pentose phosphate pathway
Fatty acid metabolism
Synthesis and degradation of ketone bodies
Purine metabolism
Pyrimidine metabolism
Alanine, aspartate and glutamate metabolism
Valine, leucine and isoleucine degradation
Lysine biosynthesis
Histidine metabolism
Phenylalanine, tyrosine and tryptophan biosynthesis
Selenocompound metabolism
D-Glutamine and D-glutamate metabolism
D-Alanine metabolism
Streptomycin biosynthesis
Lipopolysaccharide biosynthesis
Peptidoglycan biosynthesis
One carbon pool by folate
Riboflavin metabolism
Vitamin B6 metabolism
Nicotinate and nicotinamide metabolism
Pantothenate and CoA biosynthesis
Lipoic acid metabolism
Folate biosynthesis
Terpenoid backbone biosynthesis
Aminoacyl-tRNA biosynthesis
Citrate cycle (TCA cycle)
Pentose phosphate pathway
Fatty acid metabolism
Synthesis and degradation of ketone bodies
Purine metabolism
Pyrimidine metabolism
Alanine, aspartate and glutamate metabolism
Valine, leucine and isoleucine degradation
Lysine biosynthesis
Histidine metabolism
Phenylalanine, tyrosine and tryptophan biosynthesis
Selenocompound metabolism
D-Glutamine and D-glutamate metabolism
D-Alanine metabolism
Streptomycin biosynthesis
Lipopolysaccharide biosynthesis
Peptidoglycan biosynthesis
One carbon pool by folate
Riboflavin metabolism
Vitamin B6 metabolism
Nicotinate and nicotinamide metabolism
Pantothenate and CoA biosynthesis
Lipoic acid metabolism
Folate biosynthesis
Terpenoid backbone biosynthesis
Aminoacyl-tRNA biosynthesis