Hirschia baltica ATCC 49814
Names | Hirschia baltica ATCC 49814 |
---|---|
Accession numbers | NC_012982, NC_012983 |
Background | Hirschia baltica is a yellow-pigmented, hyphal, budding bacteria. Strain IFAM 1418 (ATCC 49814) was isolated from the top 5cm of water in Kiel Fjord on the Baltic Sea, Germany in October 1982 and is the type strain for this species. It prefers brackish water and grows optimally between 22 and 29 degrees Celsius. Cells (without hyphae) are 0.5 to 1.0 by 0.5 to 6.0 um and are rod shaped, elliptical, or ovoid. The hyphae have a diameter of about 0.2 um. It can use a number of sugars, organic and amino acids as carbon sources including glucose, acetate, lactate, pyruvate, alanine, arginine, asparagine, aspartic acid, glutamic acid, glutamine, isoleucine, proline, and gluconate. It cannot grow on lactose, xylose, raffinose, ribose, ethanol, glycerol, mannitol, methanol, methylammonium chloride, formamide, citrate, fumarate, malate, glycine, histidine, lysine, or valine among others. Nitrogen sources are ammonia, glutamic acid, nitrate, and urea, and it can produce ammonia from peptone (adapted from PMID 2275859). (EBI Integr8) |
Taxonomy | |
Kingdom: | Bacteria |
Phylum: | Proteobacteria |
Class: | Alphaproteobacteria |
Order: | Rhodobacterales |
Family: | Hyphomonadaceae |
Genus: | Hirschia |
Species: | baltica |
Strain | ATCC 49814 |
Complete | Yes |
Sequencing centre | (14-JUL-2009) US DOE Joint Genome Institute, 2800 Mitchell Drive B310, Walnut Creek, CA 94598-1698, USA (17-JUL-2009) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA |
Sequencing quality | Level 6: Finished |
Sequencing depth | NA |
Sequencing method | 454-GS-FLX |
Isolation site | brackish water |
Isolation country | NA |
Number of replicons | 2 |
Gram staining properties | NA |
Shape | Bacilli |
Mobility | No |
Flagellar presence | Yes |
Number of membranes | 2 |
Oxygen requirements | Aerobic |
Optimal temperature | NA |
Temperature range | Mesophilic |
Habitat | Aquatic |
Biotic relationship | Free living |
Host name | NA |
Cell arrangement | NA |
Sporulation | Nonsporulating |
Metabolism | NA |
Energy source | Chemoheterotroph |
Diseases | NA |
Pathogenicity | No |
Glycolysis / Gluconeogenesis
Citrate cycle (TCA cycle)
Pentose phosphate pathway
Fatty acid metabolism
Synthesis and degradation of ketone bodies
Purine metabolism
Pyrimidine metabolism
Alanine, aspartate and glutamate metabolism
Glycine, serine and threonine metabolism
Cysteine and methionine metabolism
Valine, leucine and isoleucine degradation
Geraniol degradation
Valine, leucine and isoleucine biosynthesis
Lysine biosynthesis
Arginine and proline metabolism
Histidine metabolism
Phenylalanine, tyrosine and tryptophan biosynthesis
Selenocompound metabolism
D-Glutamine and D-glutamate metabolism
D-Alanine metabolism
Streptomycin biosynthesis
Lipopolysaccharide biosynthesis
Peptidoglycan biosynthesis
Pyruvate metabolism
Glyoxylate and dicarboxylate metabolism
Propanoate metabolism
Butanoate metabolism
C5-Branched dibasic acid metabolism
One carbon pool by folate
Thiamine metabolism
Riboflavin metabolism
Vitamin B6 metabolism
Nicotinate and nicotinamide metabolism
Pantothenate and CoA biosynthesis
Biotin metabolism
Lipoic acid metabolism
Folate biosynthesis
Terpenoid backbone biosynthesis
Sulfur metabolism
Caprolactam degradation
Aminoacyl-tRNA biosynthesis
Citrate cycle (TCA cycle)
Pentose phosphate pathway
Fatty acid metabolism
Synthesis and degradation of ketone bodies
Purine metabolism
Pyrimidine metabolism
Alanine, aspartate and glutamate metabolism
Glycine, serine and threonine metabolism
Cysteine and methionine metabolism
Valine, leucine and isoleucine degradation
Geraniol degradation
Valine, leucine and isoleucine biosynthesis
Lysine biosynthesis
Arginine and proline metabolism
Histidine metabolism
Phenylalanine, tyrosine and tryptophan biosynthesis
Selenocompound metabolism
D-Glutamine and D-glutamate metabolism
D-Alanine metabolism
Streptomycin biosynthesis
Lipopolysaccharide biosynthesis
Peptidoglycan biosynthesis
Pyruvate metabolism
Glyoxylate and dicarboxylate metabolism
Propanoate metabolism
Butanoate metabolism
C5-Branched dibasic acid metabolism
One carbon pool by folate
Thiamine metabolism
Riboflavin metabolism
Vitamin B6 metabolism
Nicotinate and nicotinamide metabolism
Pantothenate and CoA biosynthesis
Biotin metabolism
Lipoic acid metabolism
Folate biosynthesis
Terpenoid backbone biosynthesis
Sulfur metabolism
Caprolactam degradation
Aminoacyl-tRNA biosynthesis