Dickeya dadantii Ech703
| Names | Dickeya dadantii Ech703 |
|---|---|
| Accession numbers | NC_012880 |
| Background | Dickeya dadantii (strain Ech703) formerly Erwinia chrysanthemi is a facultative aero-/anaerobic phytopathogenic bacterium that causes soft rot diseases on many crops. This organism produces pectinolytic enzymes which break down plant cell walls allowing for the spread of disease. D. dadantii catabolizes glucose by a fermentative pathway and reduce nitrates to nitrites. Pectinolytic enzymes produce indole and grow at 36 degrees Celsius. It catabolizes (+)-L-arabinose, myo-inositol, (+)-D-malate, malonate, D-mannose, mucate, saccharate and mesotartrate, but does not catabolize (+)-D-trehalose, methyl a-glucoside, (+)-D-arabitol or sorbitol. It is isolated from soft rot and wilt of a various range of plants, such as Zea mays, Ananas comosus, Brachiaria ruziziensis, Chrysanthemum morifolium, Musa spp., Nicotiana tabacum, Oryza sativa and Solanum tuberosum, and from water. D. dadantii possesses two O-serogroups O: 1 and O: 6. (Adaptated from PMID: 16014461). (EBI Integr8) |
| Taxonomy | |
| Kingdom: | Bacteria |
| Phylum: | Proteobacteria |
| Class: | Gammaproteobacteria |
| Order: | Enterobacteriales |
| Family: | Enterobacteriaceae |
| Genus: | Dickeya |
| Species: | dadantii |
| Strain | Ech703 |
| Complete | Yes |
| Sequencing centre | (24-JUN-2009) US DOE Joint Genome Institute, 2800 Mitchell Drive B310, Walnut Creek, CA 94598-1698, USA (26-JUN-2009) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA |
| Sequencing quality | Level 6: Finished |
| Sequencing depth | NA |
| Sequencing method | 454-GS-FLX |
| Isolation site | NA |
| Isolation country | NA |
| Number of replicons | 1 |
| Gram staining properties | Negative |
| Shape | Bacilli |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |
| Oxygen requirements | Facultative |
| Optimal temperature | NA |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host name | NA |
| Cell arrangement | Pairs, Singles |
| Sporulation | Nonsporulating |
| Metabolism | NA |
| Energy source | NA |
| Diseases | Soft rot disease |
| Pathogenicity | No |
Glycolysis / Gluconeogenesis
Citrate cycle (TCA cycle)
Pentose phosphate pathway
Pentose and glucuronate interconversions
Fructose and mannose metabolism
Galactose metabolism
Fatty acid biosynthesis
Fatty acid metabolism
Synthesis and degradation of ketone bodies
Ubiquinone and other terpenoid-quinone biosynthesis
Purine metabolism
Pyrimidine metabolism
Alanine, aspartate and glutamate metabolism
Glycine, serine and threonine metabolism
Cysteine and methionine metabolism
Valine, leucine and isoleucine degradation
Valine, leucine and isoleucine biosynthesis
Lysine biosynthesis
Arginine and proline metabolism
Histidine metabolism
Phenylalanine, tyrosine and tryptophan biosynthesis
beta-Alanine metabolism
Selenocompound metabolism
D-Glutamine and D-glutamate metabolism
D-Arginine and D-ornithine metabolism
D-Alanine metabolism
Glutathione metabolism
Starch and sucrose metabolism
Amino sugar and nucleotide sugar metabolism
Streptomycin biosynthesis
Lipopolysaccharide biosynthesis
Peptidoglycan biosynthesis
Glycerophospholipid metabolism
Pyruvate metabolism
Glyoxylate and dicarboxylate metabolism
Nitrotoluene degradation
Propanoate metabolism
Butanoate metabolism
C5-Branched dibasic acid metabolism
One carbon pool by folate
Thiamine metabolism
Riboflavin metabolism
Vitamin B6 metabolism
Nicotinate and nicotinamide metabolism
Pantothenate and CoA biosynthesis
Biotin metabolism
Lipoic acid metabolism
Folate biosynthesis
Terpenoid backbone biosynthesis
Nitrogen metabolism
Sulfur metabolism
Aminoacyl-tRNA biosynthesis
Citrate cycle (TCA cycle)
Pentose phosphate pathway
Pentose and glucuronate interconversions
Fructose and mannose metabolism
Galactose metabolism
Fatty acid biosynthesis
Fatty acid metabolism
Synthesis and degradation of ketone bodies
Ubiquinone and other terpenoid-quinone biosynthesis
Purine metabolism
Pyrimidine metabolism
Alanine, aspartate and glutamate metabolism
Glycine, serine and threonine metabolism
Cysteine and methionine metabolism
Valine, leucine and isoleucine degradation
Valine, leucine and isoleucine biosynthesis
Lysine biosynthesis
Arginine and proline metabolism
Histidine metabolism
Phenylalanine, tyrosine and tryptophan biosynthesis
beta-Alanine metabolism
Selenocompound metabolism
D-Glutamine and D-glutamate metabolism
D-Arginine and D-ornithine metabolism
D-Alanine metabolism
Glutathione metabolism
Starch and sucrose metabolism
Amino sugar and nucleotide sugar metabolism
Streptomycin biosynthesis
Lipopolysaccharide biosynthesis
Peptidoglycan biosynthesis
Glycerophospholipid metabolism
Pyruvate metabolism
Glyoxylate and dicarboxylate metabolism
Nitrotoluene degradation
Propanoate metabolism
Butanoate metabolism
C5-Branched dibasic acid metabolism
One carbon pool by folate
Thiamine metabolism
Riboflavin metabolism
Vitamin B6 metabolism
Nicotinate and nicotinamide metabolism
Pantothenate and CoA biosynthesis
Biotin metabolism
Lipoic acid metabolism
Folate biosynthesis
Terpenoid backbone biosynthesis
Nitrogen metabolism
Sulfur metabolism
Aminoacyl-tRNA biosynthesis