Eubacterium rectale ATCC 33656
Names | Eubacterium rectale ATCC 33656 |
---|---|
Accession numbers | NC_012781 |
Background | The human distal gut microbiota contain more bacterial cells than all of our body's other microbial communities combined. More than 90% of phylogenetic types belong to two divisions, the Bacteroidetes and the Firmicutes, with the remaining types distributed among eight other divisions. In the human colon, Clostridium cluster XIVa is 1 of 2 abundantly represented clusters of Firmicutes.Eubacterium spp., members of Clostridium closter XIVa, are a group of anaerobic Gram-positive nonspore-forming rods; strain ATCC 33656 is a human-gut derived bacterium. Germ-free mice were colonized with E.rectale or Bacteroides thetaiotaomicron, and then the response of the system as a whole to further colonization by the other bacterium were performed. These showed niche specialization and the importance of host glycans as nutrients to stabilize the ecosystem (adapted from PubMed 19321416). (HAMAP: EUBR3) |
Taxonomy | |
Kingdom: | Bacteria |
Phylum: | Firmicutes |
Class: | Clostridia |
Order: | Clostridiales |
Family: | Eubacteriaceae |
Genus: | Eubacterium |
Species: | rectale |
Strain | ATCC 33656 |
Complete | Yes |
Sequencing centre | (04-JUN-2009) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA (18-JUN-2008) Center for Genome Science, Washington University in St. Louis, 4444 Forest Park Ave., St. Louis, MO |
Sequencing quality | Level 6: Finished |
Sequencing depth | NA |
Sequencing method | 454-GS20 |
Isolation site | Human feces |
Isolation country | NA |
Number of replicons | 1 |
Gram staining properties | Positive |
Shape | Bacilli |
Mobility | No |
Flagellar presence | NA |
Number of membranes | 1 |
Oxygen requirements | Anaerobic |
Optimal temperature | NA |
Temperature range | Mesophilic |
Habitat | HostAssociated |
Biotic relationship | Free living |
Host name | Homo sapiens |
Cell arrangement | NA |
Sporulation | Nonsporulating |
Metabolism | NA |
Energy source | NA |
Diseases | NA |
Pathogenicity | No |
Glycolysis / Gluconeogenesis
Pentose phosphate pathway
Galactose metabolism
Purine metabolism
Pyrimidine metabolism
Alanine, aspartate and glutamate metabolism
Cysteine and methionine metabolism
Valine, leucine and isoleucine biosynthesis
Lysine biosynthesis
Histidine metabolism
Phenylalanine, tyrosine and tryptophan biosynthesis
Selenocompound metabolism
D-Glutamine and D-glutamate metabolism
D-Alanine metabolism
Peptidoglycan biosynthesis
One carbon pool by folate
Thiamine metabolism
Riboflavin metabolism
Vitamin B6 metabolism
Nicotinate and nicotinamide metabolism
Pantothenate and CoA biosynthesis
Folate biosynthesis
Terpenoid backbone biosynthesis
Aminoacyl-tRNA biosynthesis
Pentose phosphate pathway
Galactose metabolism
Purine metabolism
Pyrimidine metabolism
Alanine, aspartate and glutamate metabolism
Cysteine and methionine metabolism
Valine, leucine and isoleucine biosynthesis
Lysine biosynthesis
Histidine metabolism
Phenylalanine, tyrosine and tryptophan biosynthesis
Selenocompound metabolism
D-Glutamine and D-glutamate metabolism
D-Alanine metabolism
Peptidoglycan biosynthesis
One carbon pool by folate
Thiamine metabolism
Riboflavin metabolism
Vitamin B6 metabolism
Nicotinate and nicotinamide metabolism
Pantothenate and CoA biosynthesis
Folate biosynthesis
Terpenoid backbone biosynthesis
Aminoacyl-tRNA biosynthesis