Corynebacterium kroppenstedtii DSM 44385

Names | Corynebacterium kroppenstedtii DSM 44385 |
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Accession numbers | NC_012704 |
Background | Corynebacterium kroppenstedtii (strain DSM 44385 / CCUG 35717) is a Gram-positive bacterium isolated from sputum of an 82-year-old female with pulmonary disease. C.kroppenstedtii is phenotypically readily distinguished from most other corynebacteria in lacking the so-called (coryno)mycolic acids, alpha-alkyl-beta-hydroxy long-chain fatty acids with approximately 22-35 carbon atoms that are important structural components of the corynebacterial cell envelope. It is characterized by its lipophilic (lipid-requiring) phenotype and is unable to grow on synthetic media lacking lipid supplementation. It possesses a large repertoire of genes involved in sugar uptake and central carbohydrate metabolism and the presence of the mevalonate route for isoprenoid biosynthesis. The lack of mycolic acids and the lipophilic lifestyle of C. kroppenstedtii are apparently caused by gene loss, including a condensase gene cluster, a mycolate reductase gene, and a microbial type I fatty acid synthase gene. A complete oxidation pathway involved in the degradation of fatty acids is present in the genome. Evaluation of the genomic data indicated that lipophilism is the dominant feature involved in pathogenicity of C. kroppenstedtii. C.kroppenstedtii is rarely recognized in human clinical samples, but it is recovered from respiratory specimens as well as from breast tissue, pus or deep wound swaps of patients with mastitis. Pathological data reveals an association between infection by C. kroppenstedtii and inflammatory breast disease. The pathogenicity of C. kroppenstedtii might be associated with its ability to colonize fat globules, in which the organism can apparently multiply irrespective of the neutrophil response. (Adaptated from PMID: 18430482). (HAMAP: CORK4) |
Taxonomy | |
Kingdom: | Bacteria |
Phylum: | Actinobacteria |
Class: | Actinobacteria |
Order: | Actinomycetales |
Family: | Corynebacteriaceae |
Genus: | Corynebacterium |
Species: | kroppenstedtii |
Strain | DSM 44385 |
Complete | Yes |
Sequencing centre | (13-MAY-2009) Department of Genetics, Bielefeld University, Universitaetsstrasse 25, Bielefeld, NRW 33615, Germany (19-MAY-2009) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA |
Sequencing quality | Level 6: Finished |
Sequencing depth | NA |
Sequencing method | 454-GS-FLX |
Isolation site | Human sputum of a 82-year-old woman with pulmonary disease |
Isolation country | Sweden |
Number of replicons | 1 |
Gram staining properties | Positive |
Shape | Bacilli |
Mobility | No |
Flagellar presence | No |
Number of membranes | 1 |
Oxygen requirements | Facultative |
Optimal temperature | NA |
Temperature range | Mesophilic |
Habitat | HostAssociated |
Biotic relationship | Free living |
Host name | Homo sapiens |
Cell arrangement | Singles |
Sporulation | Nonsporulating |
Metabolism | NA |
Energy source | Chemoorganotroph |
Diseases | NA |
Pathogenicity | Yes |
Glycolysis / Gluconeogenesis
Citrate cycle (TCA cycle)
Pentose phosphate pathway
Fatty acid metabolism
Synthesis and degradation of ketone bodies
Purine metabolism
Pyrimidine metabolism
Alanine, aspartate and glutamate metabolism
Glycine, serine and threonine metabolism
Cysteine and methionine metabolism
Valine, leucine and isoleucine degradation
Valine, leucine and isoleucine biosynthesis
Lysine biosynthesis
Phenylalanine, tyrosine and tryptophan biosynthesis
Selenocompound metabolism
D-Glutamine and D-glutamate metabolism
D-Alanine metabolism
Streptomycin biosynthesis
Peptidoglycan biosynthesis
Pyruvate metabolism
Butanoate metabolism
C5-Branched dibasic acid metabolism
One carbon pool by folate
Thiamine metabolism
Riboflavin metabolism
Pantothenate and CoA biosynthesis
Biotin metabolism
Lipoic acid metabolism
Folate biosynthesis
Porphyrin and chlorophyll metabolism
Terpenoid backbone biosynthesis
Sulfur metabolism
Aminoacyl-tRNA biosynthesis
Citrate cycle (TCA cycle)
Pentose phosphate pathway
Fatty acid metabolism
Synthesis and degradation of ketone bodies
Purine metabolism
Pyrimidine metabolism
Alanine, aspartate and glutamate metabolism
Glycine, serine and threonine metabolism
Cysteine and methionine metabolism
Valine, leucine and isoleucine degradation
Valine, leucine and isoleucine biosynthesis
Lysine biosynthesis
Phenylalanine, tyrosine and tryptophan biosynthesis
Selenocompound metabolism
D-Glutamine and D-glutamate metabolism
D-Alanine metabolism
Streptomycin biosynthesis
Peptidoglycan biosynthesis
Pyruvate metabolism
Butanoate metabolism
C5-Branched dibasic acid metabolism
One carbon pool by folate
Thiamine metabolism
Riboflavin metabolism
Pantothenate and CoA biosynthesis
Biotin metabolism
Lipoic acid metabolism
Folate biosynthesis
Porphyrin and chlorophyll metabolism
Terpenoid backbone biosynthesis
Sulfur metabolism
Aminoacyl-tRNA biosynthesis