Tolumonas auensis DSM 9187
Names | Tolumonas auensis DSM 9187 |
---|---|
Accession numbers | NC_012691 |
Background | Tolumonas auensis (strain DSM 9187 / TA4) is a toluene-producing nonmotile Gram-negative bacterium isolated from anoxic sediments of a freshwater lake. Toluene is produced from phenylalanine, phenylpyruvate, phenyllactate, and phenylacetate, and phenol is produced from tyrosine. Both the presence of a carbon source and the presence of a toluene precursor are essential for initiation of toluene production. Toluene is accumulated during the course of the year in the hypolimnion of a eutrophic lake, and accumulation begins as soon as stratification of the water occurs and anoxic conditions are established. The optimum temperature and pH for growth are 22 degrees Celsius and pH 7.2, respectively. Bacterial growth occurs under oxic and anoxic conditions. Acetate, ethanol, and formate are the major fermentation products of the bacterium when it grows on glucose. The major lipoquinones are ubiquinone 8 and menaquinone 8 under both oxic and anoxic growth conditions. (Adaptated from 8573493). (EBI Integr8) |
Taxonomy | |
Kingdom: | Bacteria |
Phylum: | Proteobacteria |
Class: | Gammaproteobacteria |
Order: | Aeromonadales |
Family: | Aeromonadaceae |
Genus: | Tolumonas |
Species: | auensis |
Strain | DSM 9187 |
Complete | Yes |
Sequencing centre | (01-MAY-2009) US DOE Joint Genome Institute, 2800 Mitchell Drive B310, Walnut Creek, CA 94598-1698, USA (14-MAY-2009) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA |
Sequencing quality | Level 6: Finished |
Sequencing depth | NA |
Sequencing method | Sanger, 454-GS-FLX |
Isolation site | sediment of a freshwater lake in Switzerland |
Isolation country | Switzerland |
Number of replicons | 1 |
Gram staining properties | Negative |
Shape | Bacilli |
Mobility | No |
Flagellar presence | No |
Number of membranes | 2 |
Oxygen requirements | Facultative |
Optimal temperature | 22.0 |
Temperature range | Mesophilic |
Habitat | Aquatic |
Biotic relationship | Free living |
Host name | NA |
Cell arrangement | Pairs, Singles |
Sporulation | Nonsporulating |
Metabolism | NA |
Energy source | Chemoorganotroph |
Diseases | NA |
Pathogenicity | No |
Glycolysis / Gluconeogenesis
Citrate cycle (TCA cycle)
Pentose phosphate pathway
Pentose and glucuronate interconversions
Fructose and mannose metabolism
Galactose metabolism
Ubiquinone and other terpenoid-quinone biosynthesis
Purine metabolism
Pyrimidine metabolism
Alanine, aspartate and glutamate metabolism
Glycine, serine and threonine metabolism
Cysteine and methionine metabolism
Valine, leucine and isoleucine biosynthesis
Lysine biosynthesis
Histidine metabolism
Phenylalanine, tyrosine and tryptophan biosynthesis
Selenocompound metabolism
D-Glutamine and D-glutamate metabolism
D-Arginine and D-ornithine metabolism
D-Alanine metabolism
Glutathione metabolism
Starch and sucrose metabolism
Amino sugar and nucleotide sugar metabolism
Streptomycin biosynthesis
Lipopolysaccharide biosynthesis
Peptidoglycan biosynthesis
Pyruvate metabolism
C5-Branched dibasic acid metabolism
One carbon pool by folate
Thiamine metabolism
Riboflavin metabolism
Vitamin B6 metabolism
Nicotinate and nicotinamide metabolism
Pantothenate and CoA biosynthesis
Biotin metabolism
Lipoic acid metabolism
Folate biosynthesis
Porphyrin and chlorophyll metabolism
Terpenoid backbone biosynthesis
Sulfur metabolism
Aminoacyl-tRNA biosynthesis
Citrate cycle (TCA cycle)
Pentose phosphate pathway
Pentose and glucuronate interconversions
Fructose and mannose metabolism
Galactose metabolism
Ubiquinone and other terpenoid-quinone biosynthesis
Purine metabolism
Pyrimidine metabolism
Alanine, aspartate and glutamate metabolism
Glycine, serine and threonine metabolism
Cysteine and methionine metabolism
Valine, leucine and isoleucine biosynthesis
Lysine biosynthesis
Histidine metabolism
Phenylalanine, tyrosine and tryptophan biosynthesis
Selenocompound metabolism
D-Glutamine and D-glutamate metabolism
D-Arginine and D-ornithine metabolism
D-Alanine metabolism
Glutathione metabolism
Starch and sucrose metabolism
Amino sugar and nucleotide sugar metabolism
Streptomycin biosynthesis
Lipopolysaccharide biosynthesis
Peptidoglycan biosynthesis
Pyruvate metabolism
C5-Branched dibasic acid metabolism
One carbon pool by folate
Thiamine metabolism
Riboflavin metabolism
Vitamin B6 metabolism
Nicotinate and nicotinamide metabolism
Pantothenate and CoA biosynthesis
Biotin metabolism
Lipoic acid metabolism
Folate biosynthesis
Porphyrin and chlorophyll metabolism
Terpenoid backbone biosynthesis
Sulfur metabolism
Aminoacyl-tRNA biosynthesis