Exiguobacterium sp. AT1b

Names | Exiguobacterium sp. AT1b |
---|---|
Accession numbers | NC_012673 |
Background | Exiguobacterium sp. (strain ATCC BAA-1283 / AT1b) is a non-spore forming Gram-positive bacterium isolated from a slightly alkaline and highly carbonate hot spring water of Angel Terrace, which is part of Mammoth Terrace, Yellowstone National Park. Exiguobacterium sp. is a facultative anaerobe but grows more profusely aerobically. It is able to grow from 15 to 50 degrees Celsius. The cells are rods about 2 um in length, with rounded ends. They occur singly, in pairs or infrequently in chains. Exiguobacterium sp. possesses high nuclease activity and are able to metabolize cellulosic materials. It is also involved in the carbon cycling in hot environments. Through analysis of the transcriptome, experiments can be designed to study microbial survival under a variety of high temperature and low temperature conditions. The issue of adaptations to different temperatures is of interest in the field of astrobiology. Organisms that inhabit such diametrally opposite environments may be used as models for understanding cellular responses on astral bodies. (Adaptated from: http://genome.jgi-psf.org/exi_a/exi_a.home.html). (EBI Integr8) |
Taxonomy | |
Kingdom: | Bacteria |
Phylum: | Firmicutes |
Class: | Bacilli |
Order: | Bacillales |
Family: | NA |
Genus: | Exiguobacterium |
Species: | AT1b |
Strain | AT1b |
Complete | Yes |
Sequencing centre | (01-MAY-2009) US DOE Joint Genome Institute, 2800 Mitchell Drive B310, Walnut Creek, CA 94598-1698, USA (11-MAY-2009) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA |
Sequencing quality | Level 6: Finished |
Sequencing depth | NA |
Sequencing method | NA |
Isolation site | slightly alkaline, highly carbonate hot spring water of Angel Terrace, Yellowstone National Park |
Isolation country | USA |
Number of replicons | 1 |
Gram staining properties | Positive |
Shape | Bacilli |
Mobility | Yes |
Flagellar presence | Yes |
Number of membranes | 1 |
Oxygen requirements | Facultative |
Optimal temperature | NA |
Temperature range | Thermophilic |
Habitat | Specialized |
Biotic relationship | Free living |
Host name | NA |
Cell arrangement | NA |
Sporulation | Nonsporulating |
Metabolism | NA |
Energy source | NA |
Diseases | NA |
Pathogenicity | No |
Glycolysis / Gluconeogenesis
Citrate cycle (TCA cycle)
Pentose phosphate pathway
Galactose metabolism
Fatty acid metabolism
Purine metabolism
Pyrimidine metabolism
Alanine, aspartate and glutamate metabolism
Cysteine and methionine metabolism
Valine, leucine and isoleucine degradation
Valine, leucine and isoleucine biosynthesis
Lysine biosynthesis
Arginine and proline metabolism
Histidine metabolism
Phenylalanine, tyrosine and tryptophan biosynthesis
Selenocompound metabolism
D-Glutamine and D-glutamate metabolism
D-Alanine metabolism
Starch and sucrose metabolism
Amino sugar and nucleotide sugar metabolism
Streptomycin biosynthesis
Peptidoglycan biosynthesis
Pyruvate metabolism
One carbon pool by folate
Thiamine metabolism
Riboflavin metabolism
Pantothenate and CoA biosynthesis
Lipoic acid metabolism
Folate biosynthesis
Terpenoid backbone biosynthesis
Aminoacyl-tRNA biosynthesis
Citrate cycle (TCA cycle)
Pentose phosphate pathway
Galactose metabolism
Fatty acid metabolism
Purine metabolism
Pyrimidine metabolism
Alanine, aspartate and glutamate metabolism
Cysteine and methionine metabolism
Valine, leucine and isoleucine degradation
Valine, leucine and isoleucine biosynthesis
Lysine biosynthesis
Arginine and proline metabolism
Histidine metabolism
Phenylalanine, tyrosine and tryptophan biosynthesis
Selenocompound metabolism
D-Glutamine and D-glutamate metabolism
D-Alanine metabolism
Starch and sucrose metabolism
Amino sugar and nucleotide sugar metabolism
Streptomycin biosynthesis
Peptidoglycan biosynthesis
Pyruvate metabolism
One carbon pool by folate
Thiamine metabolism
Riboflavin metabolism
Pantothenate and CoA biosynthesis
Lipoic acid metabolism
Folate biosynthesis
Terpenoid backbone biosynthesis
Aminoacyl-tRNA biosynthesis