Persephonella marina EX-H1
Names | Persephonella marina EX-H1 |
---|---|
Accession numbers | NC_012439, NC_012440 |
Background | Persephonella marina (strain DSM 14350 / EX-H1) is a chemolithotrophic, thermophilic hydrogen-oxidizing bacterium isolated from a deep sea hydrothermal vent on the East Pacific Rise. P. marina has one chromosome and one megaplasmid. It is able to fix CO2 using the A-type reductive tricarboxylic acid (TCA) cycle. P. marina possesses genes to catalyze the oxidation of sulfide to elemental sulfur and is an autotrophic nitrate reducer. (EBI Integr8) |
Taxonomy | |
Kingdom: | Bacteria |
Phylum: | Aquificae |
Class: | Aquificae |
Order: | Aquificales |
Family: | Hydrogenothermaceae |
Genus: | Persephonella |
Species: | marina |
Strain | EX-H1 |
Complete | Yes |
Sequencing centre | (13-NOV-2008) J. Craig Venter Institute, 9712 Medical Center Dr, Rockville, MD 20850, USA (25-MAR-2009) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA |
Sequencing quality | Level 6: Finished |
Sequencing depth | NA |
Sequencing method | Sanger |
Isolation site | Deep sea hydrothermal vent on the East Pacific Rise |
Isolation country | NA |
Number of replicons | 2 |
Gram staining properties | Negative |
Shape | Bacilli |
Mobility | No |
Flagellar presence | Yes |
Number of membranes | 2 |
Oxygen requirements | Microaerophilic |
Optimal temperature | 73.0 |
Temperature range | Thermophilic |
Habitat | Aquatic |
Biotic relationship | Free living |
Host name | NA |
Cell arrangement | NA |
Sporulation | Nonsporulating |
Metabolism | Hydrogen oxidizer Nitrate reducer |
Energy source | Chemolithoautotroph |
Diseases | None |
Pathogenicity | No |
Citrate cycle (TCA cycle)
Purine metabolism
Pyrimidine metabolism
Alanine, aspartate and glutamate metabolism
Cysteine and methionine metabolism
Valine, leucine and isoleucine biosynthesis
Lysine biosynthesis
Histidine metabolism
Phenylalanine, tyrosine and tryptophan biosynthesis
D-Glutamine and D-glutamate metabolism
D-Alanine metabolism
Lipopolysaccharide biosynthesis
Peptidoglycan biosynthesis
Nitrotoluene degradation
C5-Branched dibasic acid metabolism
One carbon pool by folate
Carbon fixation pathways in prokaryotes
Thiamine metabolism
Riboflavin metabolism
Nicotinate and nicotinamide metabolism
Pantothenate and CoA biosynthesis
Biotin metabolism
Lipoic acid metabolism
Folate biosynthesis
Terpenoid backbone biosynthesis
Aminoacyl-tRNA biosynthesis
Purine metabolism
Pyrimidine metabolism
Alanine, aspartate and glutamate metabolism
Cysteine and methionine metabolism
Valine, leucine and isoleucine biosynthesis
Lysine biosynthesis
Histidine metabolism
Phenylalanine, tyrosine and tryptophan biosynthesis
D-Glutamine and D-glutamate metabolism
D-Alanine metabolism
Lipopolysaccharide biosynthesis
Peptidoglycan biosynthesis
Nitrotoluene degradation
C5-Branched dibasic acid metabolism
One carbon pool by folate
Carbon fixation pathways in prokaryotes
Thiamine metabolism
Riboflavin metabolism
Nicotinate and nicotinamide metabolism
Pantothenate and CoA biosynthesis
Biotin metabolism
Lipoic acid metabolism
Folate biosynthesis
Terpenoid backbone biosynthesis
Aminoacyl-tRNA biosynthesis