Desulfitobacterium hafniense DCB-2
Names | Desulfitobacterium hafniense DCB-2 |
---|---|
Accession numbers | NC_011830 |
Background | Desulfitobacterium hafniense (strain DCB-2 / DSM 10664) is an anaerobic dehalogenating, spore-forming, Gram-positive, bacterium isolated from municipal sludge. It grows by chlororespiration and dehalogenates a variety of aromatic and alkyl chlorinated compounds such as chlorinated phenols, chlorinated ethenes (widely used solvents) and there is suggestive evidence that it may also dechlorinate polychlorinated biphenyls (PCBs). D. hafniense utilizes fumarate, sulfite, and thiosulfate (but not thiousulfate) as terminal electron acceptors. (adapted from http://genome.jgi-psf.org/finished_microbes/desha/desha.home.html). (EBI Integr8) |
Taxonomy | |
Kingdom: | Bacteria |
Phylum: | Firmicutes |
Class: | Clostridia |
Order: | Clostridiales |
Family: | Peptococcaceae |
Genus: | Desulfitobacterium |
Species: | hafniense |
Strain | DCB-2 |
Complete | Yes |
Sequencing centre | (06-JAN-2009) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA (29-DEC-2008) US DOE Joint Genome Institute, 2800 Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA |
Sequencing quality | Level 6: Finished |
Sequencing depth | NA |
Sequencing method | Sanger |
Isolation site | Municipal sludge, Denmark |
Isolation country | Denmark |
Number of replicons | 1 |
Gram staining properties | Negative |
Shape | Bacilli |
Mobility | Yes |
Flagellar presence | Yes |
Number of membranes | 1 |
Oxygen requirements | Anaerobic |
Optimal temperature | 37.0 |
Temperature range | Mesophilic |
Habitat | Specialized |
Biotic relationship | Free living |
Host name | NA |
Cell arrangement | Chains, Pairs, Singles |
Sporulation | Sporulating |
Metabolism | Degrades pollutants |
Energy source | NA |
Diseases | NA |
Pathogenicity | No |
Glycolysis / Gluconeogenesis
Citrate cycle (TCA cycle)
Pentose phosphate pathway
Fatty acid metabolism
Purine metabolism
Pyrimidine metabolism
Alanine, aspartate and glutamate metabolism
Glycine, serine and threonine metabolism
Cysteine and methionine metabolism
Valine, leucine and isoleucine degradation
Valine, leucine and isoleucine biosynthesis
Lysine biosynthesis
Histidine metabolism
Phenylalanine, tyrosine and tryptophan biosynthesis
Taurine and hypotaurine metabolism
Selenocompound metabolism
D-Glutamine and D-glutamate metabolism
D-Arginine and D-ornithine metabolism
D-Alanine metabolism
Streptomycin biosynthesis
Peptidoglycan biosynthesis
Pyruvate metabolism
Glyoxylate and dicarboxylate metabolism
Nitrotoluene degradation
Butanoate metabolism
C5-Branched dibasic acid metabolism
One carbon pool by folate
Methane metabolism
Carbon fixation pathways in prokaryotes
Thiamine metabolism
Riboflavin metabolism
Vitamin B6 metabolism
Nicotinate and nicotinamide metabolism
Pantothenate and CoA biosynthesis
Folate biosynthesis
Porphyrin and chlorophyll metabolism
Terpenoid backbone biosynthesis
Nitrogen metabolism
Sulfur metabolism
Aminoacyl-tRNA biosynthesis
Citrate cycle (TCA cycle)
Pentose phosphate pathway
Fatty acid metabolism
Purine metabolism
Pyrimidine metabolism
Alanine, aspartate and glutamate metabolism
Glycine, serine and threonine metabolism
Cysteine and methionine metabolism
Valine, leucine and isoleucine degradation
Valine, leucine and isoleucine biosynthesis
Lysine biosynthesis
Histidine metabolism
Phenylalanine, tyrosine and tryptophan biosynthesis
Taurine and hypotaurine metabolism
Selenocompound metabolism
D-Glutamine and D-glutamate metabolism
D-Arginine and D-ornithine metabolism
D-Alanine metabolism
Streptomycin biosynthesis
Peptidoglycan biosynthesis
Pyruvate metabolism
Glyoxylate and dicarboxylate metabolism
Nitrotoluene degradation
Butanoate metabolism
C5-Branched dibasic acid metabolism
One carbon pool by folate
Methane metabolism
Carbon fixation pathways in prokaryotes
Thiamine metabolism
Riboflavin metabolism
Vitamin B6 metabolism
Nicotinate and nicotinamide metabolism
Pantothenate and CoA biosynthesis
Folate biosynthesis
Porphyrin and chlorophyll metabolism
Terpenoid backbone biosynthesis
Nitrogen metabolism
Sulfur metabolism
Aminoacyl-tRNA biosynthesis