Shewanella piezotolerans WP3

Shewanella_piezotolerans
Names Shewanella piezotolerans WP3
Accession numbers NC_011566
Background Shewanella are facultatively anaerobic, Gram-negative bacteria, motile by polar flagella, rod-like, and generally associated with aquatic or marine environments. They are capable of using a variety of compounds as electron acceptors, including oxygen, iron, manganese, uranium, nitrate, nitrite, fumarate, to name but a few. This ability makes Shewanella important for bioremediation of contaminated metals and radioactive wastes. The genus Shewanella comprises 36 recognized and hundreds of uncharacterized cultivable species.Shewanella piezotolerans WP3, a piezotolerant and psychrotolerant iron reducing bacterium was isolated from a western Pacific Ocean sediment sample located at a water column depth of 1,914 m. It grows optimally at 15-20 degrees C and with a broad pressure optimum extending from atmospheric pressure to about 20 MPa. It possesses numerous genes or gene clusters which help it to cope with extreme living conditions such as genes for two sets of flagellum systems, structural RNA modification, eicosapentaenoic acid (EPA) biosynthesis and osmolyte transport and synthesis. And WP3 contains 55 open reading frames encoding putative c-type cytochromes which are substantial to its wide environmental adaptation ability. The mtr-omc gene cluster involved in the insoluble metal reduction in the Shewanella genus was identified and compared. The two sets of flagellum systems were found to be differentially regulated under low temperature and high pressure; the lateral flagellum system was found essential for its motility and living at low temperature (adapted from PubMed 18398463). (HAMAP: SHEPW)
Taxonomy
Kingdom:Bacteria
Phylum:Proteobacteria
Class:Gammaproteobacteria
Order:Alteromonadales
Family:Shewanellaceae
Genus:Shewanella
Species:piezotolerans
Strain WP3
Complete Yes
Sequencing centre (13-NOV-2008) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA
(26-SEP-2006) Beijing Genomics Institute, Chinese Academy of Sciences, Beijing Airport Industrial Zone B-6, Beijing 101300,
Sequencing quality Level 6: Finished
Sequencing depth NA
Sequencing method Sanger
Isolation site Sediment; under 1,914 m of water depth collected in the west Pacific Ocean
Isolation country NA
Number of replicons 1
Gram staining properties Negative
Shape Bacilli
Mobility Yes
Flagellar presence Yes
Number of membranes 2
Oxygen requirements Facultative
Optimal temperature 15.0
Temperature range Mesophilic
Habitat Specialized
Biotic relationship Free living
Host name NA
Cell arrangement Pairs, Singles
Sporulation Nonsporulating
Metabolism NA
Energy source Heterotroph
Diseases None
Pathogenicity No