Helicobacter pylori P12

Names | Helicobacter pylori P12 |
---|---|
Accession numbers | NC_011498, NC_011499 |
Background | Helicobacter is a gram-negative, slow-growing organism. H. pylori has importance as a common human pathogen. Helicobacter pylori is composed of a single circular chromosome with 1,667,867 base pairs, containing about 1590 coding regions (TIGR, 2004).Helicobacter is a spiral shaped organism with flagella. It has a potent multisubunit urease enzyme that enables it to survive in acidic pH conditions and colonize the gastric environment (TIGR, 2004). H. pylori utilizes the enzyme urease to convert urea into bicarbonate and ammonia to combat the low acidity of the stomach. The mixing of the two extreme pH levels creates a neutralized protective cloud around the H. pylori, allowing it to survive in the stomach (Helicobacter Foundation, 2004).Helicobacter is able to live in the acidity of the stomach and duodenum, living on the mucus lining of the stomach, causing several health problems for the host (Helicobacter Foundation, 2004). Helicobacter can also be seen in animals such as cheetahs, dogs, cats, and ferrets (J. Solnick et al. 2004).Until the discovery of Helicobacter in 1982, ulcers were thought to be caused by stress. Now it is known that ulcers, in addition to gastritis, are caused by a bacterial infection of H. pylori. Though relatively easy to treat with antibiotics, H. pylori can be a risk factor for gastric cancer if it becomes a long-term infection (D. J. Kelly, 2004).The body's natural defenses cannot combat H. pylori because white and killer T cells cannot easily get through the stomach lining. The defense cells eventually die, spilling their superoxide radicals on stomach linig cells, on which H. pylori can feed (Helicobacter Foundation, 2004). (From http://microbewiki.kenyon.edu/index.php/Helicobacter) (MicrobeWiki: Helicobacter) |
Taxonomy | |
Kingdom: | Bacteria |
Phylum: | Proteobacteria |
Class: | Epsilonproteobacteria |
Order: | Campylobacterales |
Family: | Helicobacteraceae |
Genus: | Helicobacter |
Species: | pylori |
Strain | P12 |
Complete | Yes |
Sequencing centre | (22-OCT-2008) Max von Pettenkofer-Institut fuer Hygiene und Medizinische Mikrobiologie, Ludwig-Maximilians-Universitaet (30-OCT-2008) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA |
Sequencing quality | Level 6: Finished |
Sequencing depth | NA |
Sequencing method | NA |
Isolation site | duodenal ulcer patient in Germany |
Isolation country | Germany |
Number of replicons | 2 |
Gram staining properties | Negative |
Shape | Spirilla |
Mobility | No |
Flagellar presence | Yes |
Number of membranes | 2 |
Oxygen requirements | Microaerophilic |
Optimal temperature | NA |
Temperature range | Mesophilic |
Habitat | HostAssociated |
Biotic relationship | NA |
Host name | Homo sapiens |
Cell arrangement | Singles |
Sporulation | Nonsporulating |
Metabolism | NA |
Energy source | NA |
Diseases | Gastric inflammation and peptic ulcer disease |
Pathogenicity | Yes |
Citrate cycle (TCA cycle)
Pentose phosphate pathway
Synthesis and degradation of ketone bodies
Purine metabolism
Pyrimidine metabolism
Alanine, aspartate and glutamate metabolism
Valine, leucine and isoleucine biosynthesis
Lysine biosynthesis
Phenylalanine, tyrosine and tryptophan biosynthesis
D-Glutamine and D-glutamate metabolism
D-Alanine metabolism
Lipopolysaccharide biosynthesis
Peptidoglycan biosynthesis
Riboflavin metabolism
Pantothenate and CoA biosynthesis
Biotin metabolism
Folate biosynthesis
Terpenoid backbone biosynthesis
Aminoacyl-tRNA biosynthesis
Pentose phosphate pathway
Synthesis and degradation of ketone bodies
Purine metabolism
Pyrimidine metabolism
Alanine, aspartate and glutamate metabolism
Valine, leucine and isoleucine biosynthesis
Lysine biosynthesis
Phenylalanine, tyrosine and tryptophan biosynthesis
D-Glutamine and D-glutamate metabolism
D-Alanine metabolism
Lipopolysaccharide biosynthesis
Peptidoglycan biosynthesis
Riboflavin metabolism
Pantothenate and CoA biosynthesis
Biotin metabolism
Folate biosynthesis
Terpenoid backbone biosynthesis
Aminoacyl-tRNA biosynthesis
NCBI Genomes
NC_011498NC_011499