Herpetosiphon aurantiacus DSM 785
Names | Herpetosiphon aurantiacus DSM 785 |
---|---|
Accession numbers | NC_009972, NC_009973, NC_009974 |
Background | The phylum Chloroflexi, which is divided into two orders, the Chloroflexales and the Herpetosiphonales, is a deep-branching lineage of the Bacteria. Members of the former order synthesize BChls and are obligately or facultatively phototrophic, while members of the latter order do not synthesize BChls and are not phototrophs. Although members of both groups are designated as Gram-negative, they do not synthesize lipopolysaccharide and thus do not possess outer membranes.Herpetosiphon aurantiacus ATCC 23779 was isolated from Birch Lake, Minnesota USA. It is an ensheathed, gliding bacterium; the sheathes move with the bacterium which is unflagellated. It divides by septum formation and does not contain chlorophyll. It is the type strain (adapted from PubMed 5669912 and 15340781). (HAMAP: HERA2) |
Taxonomy | |
Kingdom: | Bacteria |
Phylum: | Chloroflexi |
Class: | Chloroflexi |
Order: | Herpetosiphonales |
Family: | Herpetosiphonaceae |
Genus: | Herpetosiphon |
Species: | aurantiacus |
Strain | ATCC 23779 |
Complete | Yes |
Sequencing centre | (13-NOV-2007) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA (30-OCT-2007) US DOE Joint Genome Institute, 2800 Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA |
Sequencing quality | Level 6: Finished |
Sequencing depth | NA |
Sequencing method | Sanger |
Isolation site | Birch Lake in Minnesota |
Isolation country | USA |
Number of replicons | 3 |
Gram staining properties | Negative |
Shape | Filamentous |
Mobility | Yes |
Flagellar presence | No |
Number of membranes | 1 |
Oxygen requirements | Aerobic |
Optimal temperature | NA |
Temperature range | Mesophilic |
Habitat | Multiple |
Biotic relationship | Free living |
Host name | NA |
Cell arrangement | NA |
Sporulation | Nonsporulating |
Metabolism | NA |
Energy source | Chemoorganoheterotroph |
Diseases | NA |
Pathogenicity | No |
Glycolysis / Gluconeogenesis
Citrate cycle (TCA cycle)
Pentose phosphate pathway
Galactose metabolism
Fatty acid metabolism
Synthesis and degradation of ketone bodies
Purine metabolism
Pyrimidine metabolism
Alanine, aspartate and glutamate metabolism
Glycine, serine and threonine metabolism
Cysteine and methionine metabolism
Valine, leucine and isoleucine degradation
Geraniol degradation
Valine, leucine and isoleucine biosynthesis
Lysine biosynthesis
Histidine metabolism
Phenylalanine, tyrosine and tryptophan biosynthesis
Selenocompound metabolism
D-Glutamine and D-glutamate metabolism
D-Alanine metabolism
Streptomycin biosynthesis
Peptidoglycan biosynthesis
Pyruvate metabolism
C5-Branched dibasic acid metabolism
One carbon pool by folate
Carbon fixation pathways in prokaryotes
Thiamine metabolism
Riboflavin metabolism
Nicotinate and nicotinamide metabolism
Pantothenate and CoA biosynthesis
Lipoic acid metabolism
Folate biosynthesis
Terpenoid backbone biosynthesis
Sulfur metabolism
Aminoacyl-tRNA biosynthesis
Citrate cycle (TCA cycle)
Pentose phosphate pathway
Galactose metabolism
Fatty acid metabolism
Synthesis and degradation of ketone bodies
Purine metabolism
Pyrimidine metabolism
Alanine, aspartate and glutamate metabolism
Glycine, serine and threonine metabolism
Cysteine and methionine metabolism
Valine, leucine and isoleucine degradation
Geraniol degradation
Valine, leucine and isoleucine biosynthesis
Lysine biosynthesis
Histidine metabolism
Phenylalanine, tyrosine and tryptophan biosynthesis
Selenocompound metabolism
D-Glutamine and D-glutamate metabolism
D-Alanine metabolism
Streptomycin biosynthesis
Peptidoglycan biosynthesis
Pyruvate metabolism
C5-Branched dibasic acid metabolism
One carbon pool by folate
Carbon fixation pathways in prokaryotes
Thiamine metabolism
Riboflavin metabolism
Nicotinate and nicotinamide metabolism
Pantothenate and CoA biosynthesis
Lipoic acid metabolism
Folate biosynthesis
Terpenoid backbone biosynthesis
Sulfur metabolism
Aminoacyl-tRNA biosynthesis