Alkaliphilus oremlandii OhILAs
Names | Alkaliphilus oremlandii OhILAs |
---|---|
Accession numbers | NC_009922 |
Background | Alkaliphilus oremlandii (strain OhILAs) is a versatile strict anaerobic, spore-forming, mesophillic Gram-positive bacterium phylogenetically associated with the Firmicutes. Clostridium sp. OhILAs has been renamed to Alkaliphilus oremlandii OhILAs. A. oremlandii was isolated from sediments of the Ohio River (Pittsburgh, PA). This bacterium can ferment glycerol, fructose, and lactate, as well as respire arsenate and thiosulfate. It is one of four organisms that are being sequenced by the JGI as part of the "Arsenic Genome Project" to further elucidate the microbial transformation of arsenic. Although it grows optimally at pH 8.4, 16S rRNA gene sequence analysis indicated it is an Alkaliphilus species. Alkaliphilus oremlandii OhILAs is unique in that it can tolerate high arsenate concentrations (>40 mM) and readily degrades the organoarsenical 3-nitro-4-hydroxy benzene arsonic acid (roxarsone) within 48 hours. Thus it has great potential for use in the remediation of organoarsenicals in poultry waste and a model organism to investigate the process. (PMID: 17328188). (EBI Integr8) |
Taxonomy | |
Kingdom: | Bacteria |
Phylum: | Firmicutes |
Class: | Clostridia |
Order: | Clostridiales |
Family: | Clostridiaceae |
Genus: | Alkaliphilus |
Species: | oremlandii |
Strain | OhILAs |
Complete | Yes |
Sequencing centre | (09-OCT-2007) US DOE Joint Genome Institute, 2800 Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA (16-OCT-2007) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA |
Sequencing quality | Level 6: Finished |
Sequencing depth | NA |
Sequencing method | Sanger, 454 |
Isolation site | Anoxic sediments from the Ohio River, Pennsylvania |
Isolation country | USA |
Number of replicons | 1 |
Gram staining properties | Positive |
Shape | Bacilli |
Mobility | Yes |
Flagellar presence | Yes |
Number of membranes | 1 |
Oxygen requirements | Anaerobic |
Optimal temperature | NA |
Temperature range | Mesophilic |
Habitat | Aquatic |
Biotic relationship | Free living |
Host name | NA |
Cell arrangement | NA |
Sporulation | Sporulating |
Metabolism | Nitrogen fixation |
Energy source | NA |
Diseases | NA |
Pathogenicity | No |
Synthesis and degradation of ketone bodies
Purine metabolism
Pyrimidine metabolism
Alanine, aspartate and glutamate metabolism
Glycine, serine and threonine metabolism
Cysteine and methionine metabolism
Valine, leucine and isoleucine biosynthesis
Selenocompound metabolism
D-Glutamine and D-glutamate metabolism
D-Alanine metabolism
Peptidoglycan biosynthesis
Butanoate metabolism
One carbon pool by folate
Thiamine metabolism
Pantothenate and CoA biosynthesis
Porphyrin and chlorophyll metabolism
Terpenoid backbone biosynthesis
Nitrogen metabolism
Aminoacyl-tRNA biosynthesis
Purine metabolism
Pyrimidine metabolism
Alanine, aspartate and glutamate metabolism
Glycine, serine and threonine metabolism
Cysteine and methionine metabolism
Valine, leucine and isoleucine biosynthesis
Selenocompound metabolism
D-Glutamine and D-glutamate metabolism
D-Alanine metabolism
Peptidoglycan biosynthesis
Butanoate metabolism
One carbon pool by folate
Thiamine metabolism
Pantothenate and CoA biosynthesis
Porphyrin and chlorophyll metabolism
Terpenoid backbone biosynthesis
Nitrogen metabolism
Aminoacyl-tRNA biosynthesis