Vibrio harveyi ATCC BAA-1116
Names | Vibrio harveyi ATCC BAA-1116 |
---|---|
Accession numbers | NC_009777, NC_009783, NC_009784 |
Background | Vibrio harveyi is a bioluminescent marine bacterium in which the luminescence genes are regulated by quorum sensing. Within the aqueous environment, this free living organism can be found throughout the water column, buried in the sediment, as well as on the exterior surfaces of marine organisms. Unlike the related bacterial species, Vibrio fischeri, which forms a mutualistic association with a squid species, Vibrio harveyi does not form any symbiotic relationship with any other organism. However, there is one well documented example of a relationship with another microorganism causing a phenomenon known as the Milky Sea effect. This occurs when large areas of the ocean are filled with luminescing V. harveyi living in association with colonies of the microalga Phaeocystis. Vibrio harveyi is a pathogen of fish and invertebrates, including sharks, sea-bass, seahorses, lobster, and shrimp. Its pathogenicity depends on the concentration of V. harveyi cells at a given time. Diseases caused by V. harveyi include eye-lesions, gastro-enteritis, vasculitis, and luminous vibriosis. Luminous vibriosis is a leading cause of death among commercially farmed shrimp and other aquaculture. The infection enters through the mouth and forms plaques, then spreads to the innards and the appendages. Loss of limb function and appendage degradation has been documented. Contamination can spread all the way to egg and larval tanks, thus causing an even bigger problem for shrimp farmers. Luminous vibriosis has been documented in many other crustaceans all of which glow in the dark when infected. (HAMAP: VIBHB) |
Taxonomy | |
Kingdom: | Bacteria |
Phylum: | Proteobacteria |
Class: | Gammaproteobacteria |
Order: | Vibrionales |
Family: | Vibrionaceae |
Genus: | Vibrio |
Species: | harveyi |
Strain | ATCC BAA-1116 |
Complete | Yes |
Sequencing centre | (06-SEP-2007) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA (16-AUG-2007) Genetics, Genome Sequencing Center, 4444 Forest Park Parkway, St. Louis, MO 63108, USA |
Sequencing quality | Level 6: Finished |
Sequencing depth | NA |
Sequencing method | Sanger, 454 |
Isolation site | Ocean isolate obtained in 1993 |
Isolation country | NA |
Number of replicons | 3 |
Gram staining properties | Negative |
Shape | Bacilli |
Mobility | Yes |
Flagellar presence | Yes |
Number of membranes | 2 |
Oxygen requirements | Facultative |
Optimal temperature | 20.0 |
Temperature range | Mesophilic |
Habitat | Aquatic |
Biotic relationship | Free living |
Host name | NA |
Cell arrangement | Singles |
Sporulation | Nonsporulating |
Metabolism | NA |
Energy source | Heterotroph |
Diseases | Vibriosis |
Pathogenicity | No |
Glycolysis / Gluconeogenesis
Citrate cycle (TCA cycle)
Pentose phosphate pathway
Galactose metabolism
Fatty acid metabolism
Synthesis and degradation of ketone bodies
Ubiquinone and other terpenoid-quinone biosynthesis
Purine metabolism
Pyrimidine metabolism
Alanine, aspartate and glutamate metabolism
Glycine, serine and threonine metabolism
Cysteine and methionine metabolism
Valine, leucine and isoleucine degradation
Geraniol degradation
Valine, leucine and isoleucine biosynthesis
Lysine biosynthesis
Arginine and proline metabolism
Histidine metabolism
Phenylalanine, tyrosine and tryptophan biosynthesis
Taurine and hypotaurine metabolism
Selenocompound metabolism
D-Glutamine and D-glutamate metabolism
D-Alanine metabolism
Glutathione metabolism
Amino sugar and nucleotide sugar metabolism
Lipopolysaccharide biosynthesis
Peptidoglycan biosynthesis
Pyruvate metabolism
Glyoxylate and dicarboxylate metabolism
Propanoate metabolism
Butanoate metabolism
C5-Branched dibasic acid metabolism
One carbon pool by folate
Methane metabolism
Thiamine metabolism
Riboflavin metabolism
Vitamin B6 metabolism
Nicotinate and nicotinamide metabolism
Pantothenate and CoA biosynthesis
Biotin metabolism
Lipoic acid metabolism
Folate biosynthesis
Terpenoid backbone biosynthesis
Nitrogen metabolism
Sulfur metabolism
Aminoacyl-tRNA biosynthesis
Biosynthesis of siderophore group nonribosomal peptides
Citrate cycle (TCA cycle)
Pentose phosphate pathway
Galactose metabolism
Fatty acid metabolism
Synthesis and degradation of ketone bodies
Ubiquinone and other terpenoid-quinone biosynthesis
Purine metabolism
Pyrimidine metabolism
Alanine, aspartate and glutamate metabolism
Glycine, serine and threonine metabolism
Cysteine and methionine metabolism
Valine, leucine and isoleucine degradation
Geraniol degradation
Valine, leucine and isoleucine biosynthesis
Lysine biosynthesis
Arginine and proline metabolism
Histidine metabolism
Phenylalanine, tyrosine and tryptophan biosynthesis
Taurine and hypotaurine metabolism
Selenocompound metabolism
D-Glutamine and D-glutamate metabolism
D-Alanine metabolism
Glutathione metabolism
Amino sugar and nucleotide sugar metabolism
Lipopolysaccharide biosynthesis
Peptidoglycan biosynthesis
Pyruvate metabolism
Glyoxylate and dicarboxylate metabolism
Propanoate metabolism
Butanoate metabolism
C5-Branched dibasic acid metabolism
One carbon pool by folate
Methane metabolism
Thiamine metabolism
Riboflavin metabolism
Vitamin B6 metabolism
Nicotinate and nicotinamide metabolism
Pantothenate and CoA biosynthesis
Biotin metabolism
Lipoic acid metabolism
Folate biosynthesis
Terpenoid backbone biosynthesis
Nitrogen metabolism
Sulfur metabolism
Aminoacyl-tRNA biosynthesis
Biosynthesis of siderophore group nonribosomal peptides