Roseiflexus castenholzii DSM 13941
Names | Roseiflexus castenholzii DSM 13941 |
---|---|
Accession numbers | NC_009767 |
Background | Roseiflexus is a filamentous anoxygenic phototroph, one of the green filamentous bacteria. This lineage is placed on the deepest branch of all photosynthetic bacteria. R.castenholzii HL08 was isolated from a microbial mat in a Japanese hot spring. It is able to grow photoheterotrophically under anaerobic light conditions and also chemoheterotrophically under aerobic dark conditions. Optimal growth occurs at 50 degrees C and pH 7.5-8.0. The cells contain bacteriochlorophyll (Bchl) a and gamma-carotene derivatives as photosynthetic pigments, but lack Bchl c and chlorosomes, a type of light-harvesting structure. Like many other phototrophic bacteria it has gliding motility. Comparative genomics indicates that it appears to have the genetic capacity for CO2 reduction via the 3-hydroxypropionate pathway (adapted in part from PubMed 11837302 and 17635550). (EBI Integr8) |
Taxonomy | |
Kingdom: | Bacteria |
Phylum: | Chloroflexi |
Class: | Chloroflexi |
Order: | Chloroflexales |
Family: | Chloroflexaceae |
Genus: | Roseiflexus |
Species: | castenholzii |
Strain | DSM 13941 |
Complete | Yes |
Sequencing centre | (04-SEP-2007) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA (20-AUG-2007) US DOE Joint Genome Institute, 2800 Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA |
Sequencing quality | Level 6: Finished |
Sequencing depth | NA |
Sequencing method | Sanger |
Isolation site | Hot spring microbial mat |
Isolation country | Japan |
Number of replicons | 1 |
Gram staining properties | Negative |
Shape | Filamentous |
Mobility | Yes |
Flagellar presence | No |
Number of membranes | 1 |
Oxygen requirements | Facultative |
Optimal temperature | 50.0 |
Temperature range | Thermophilic |
Habitat | Aquatic |
Biotic relationship | Free living |
Host name | NA |
Cell arrangement | NA |
Sporulation | Nonsporulating |
Metabolism | NA |
Energy source | Photoautotroph, Photosynthetic |
Diseases | NA |
Pathogenicity | No |
Glycolysis / Gluconeogenesis
Citrate cycle (TCA cycle)
Pentose phosphate pathway
Galactose metabolism
Fatty acid metabolism
Synthesis and degradation of ketone bodies
Purine metabolism
Pyrimidine metabolism
Alanine, aspartate and glutamate metabolism
Glycine, serine and threonine metabolism
Cysteine and methionine metabolism
Valine, leucine and isoleucine degradation
Valine, leucine and isoleucine biosynthesis
Lysine biosynthesis
Arginine and proline metabolism
Histidine metabolism
Phenylalanine, tyrosine and tryptophan biosynthesis
Selenocompound metabolism
D-Glutamine and D-glutamate metabolism
D-Alanine metabolism
Streptomycin biosynthesis
Peptidoglycan biosynthesis
Pyruvate metabolism
Chloroalkane and chloroalkene degradation
Glyoxylate and dicarboxylate metabolism
C5-Branched dibasic acid metabolism
One carbon pool by folate
Carbon fixation pathways in prokaryotes
Thiamine metabolism
Vitamin B6 metabolism
Nicotinate and nicotinamide metabolism
Pantothenate and CoA biosynthesis
Folate biosynthesis
Porphyrin and chlorophyll metabolism
Terpenoid backbone biosynthesis
Sulfur metabolism
Aminoacyl-tRNA biosynthesis
Citrate cycle (TCA cycle)
Pentose phosphate pathway
Galactose metabolism
Fatty acid metabolism
Synthesis and degradation of ketone bodies
Purine metabolism
Pyrimidine metabolism
Alanine, aspartate and glutamate metabolism
Glycine, serine and threonine metabolism
Cysteine and methionine metabolism
Valine, leucine and isoleucine degradation
Valine, leucine and isoleucine biosynthesis
Lysine biosynthesis
Arginine and proline metabolism
Histidine metabolism
Phenylalanine, tyrosine and tryptophan biosynthesis
Selenocompound metabolism
D-Glutamine and D-glutamate metabolism
D-Alanine metabolism
Streptomycin biosynthesis
Peptidoglycan biosynthesis
Pyruvate metabolism
Chloroalkane and chloroalkene degradation
Glyoxylate and dicarboxylate metabolism
C5-Branched dibasic acid metabolism
One carbon pool by folate
Carbon fixation pathways in prokaryotes
Thiamine metabolism
Vitamin B6 metabolism
Nicotinate and nicotinamide metabolism
Pantothenate and CoA biosynthesis
Folate biosynthesis
Porphyrin and chlorophyll metabolism
Terpenoid backbone biosynthesis
Sulfur metabolism
Aminoacyl-tRNA biosynthesis