Kineococcus radiotolerans SRS30216

Names | Kineococcus radiotolerans SRS30216 |
---|---|
Accession numbers | NC_009660, NC_009664, NC_009806 |
Background | Kineococcus radiotolerans (strain ATCC BAA-149 / DSM 14245 / SRS30216) is an aerobic coccoid bacterium originally isolated from a high-level radioactive waste cell at the Savannah River Site in Aiken, South Carolina, USA. This is the type strain of the species. It produces an orange carotenoid-like pigment. The bacterium typically forms symmetrical, multi-cell clusters in which each cell is surrounded by a thick extracellular polymer shell. In cultures supplemented with sandy loam extract, single cells become predominantly motile due to appearance of single polar flagellum. Cell growth occurs between 11-41 degrees Celsius, pH 5-9, and in the presence of 5% NaCl and 20% glucose. Carbohydrates and alcohols are primary growth substrates. Similarly to Deinococcus radiodurans, K. radiotolerans exhibits a high degree of resistance to ionizing gamma-radiation. Cells are also highly resistant to dessication. Kineococcus-like 16S rRNA gene sequences have been reported from the Mojave desert and other arid environments where these bacteria seem to be ubiquitous. Because of its high resistance to ionizing radiation and desiccation, K. radiotolerans has potential use in applications involving in situ biodegradation of problematic organic contaminants from highly radioactive environments. Moreover, comparative functional genomic characterization of this species and other known radiotolerant bacteria such as Deinococcus radiodurans and Rubrobacter xylanophilus will shed light onto the strategies these bacteria use for survival in high radiation environments, as well as the evolutionary origins of radioresistance and their highly efficient DNA repair machinery. (EBI Integr8) |
Taxonomy | |
Kingdom: | Bacteria |
Phylum: | Actinobacteria |
Class: | Actinobacteria |
Order: | Actinomycetales |
Family: | Kineosporiaceae |
Genus: | Kineococcus |
Species: | radiotolerans |
Strain | SRS30216 |
Complete | Yes |
Sequencing centre | (04-JUL-2007) US DOE Joint Genome Institute, 2800 Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA (13-AUG-2009) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA (14-AUG-2008) US DOE Joint Genome Institute, 2800 Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA |
Sequencing quality | Level 6: Finished |
Sequencing depth | NA |
Sequencing method | Sanger |
Isolation site | High-level radioactive waste cell at the Savannah River Site in Aiken of South Carolina in 2002 |
Isolation country | USA |
Number of replicons | 3 |
Gram staining properties | Positive |
Shape | Cocci |
Mobility | No |
Flagellar presence | Yes |
Number of membranes | 1 |
Oxygen requirements | Aerobic |
Optimal temperature | 32.0 |
Temperature range | Mesophilic |
Habitat | Multiple |
Biotic relationship | Free living |
Host name | NA |
Cell arrangement | Clusters, Singles |
Sporulation | Nonsporulating |
Metabolism | NA |
Energy source | NA |
Diseases | None |
Pathogenicity | No |
Glycolysis / Gluconeogenesis
Citrate cycle (TCA cycle)
Pentose phosphate pathway
Galactose metabolism
Fatty acid metabolism
Synthesis and degradation of ketone bodies
Purine metabolism
Pyrimidine metabolism
Alanine, aspartate and glutamate metabolism
Glycine, serine and threonine metabolism
Cysteine and methionine metabolism
Valine, leucine and isoleucine degradation
Valine, leucine and isoleucine biosynthesis
Lysine biosynthesis
Arginine and proline metabolism
Histidine metabolism
Phenylalanine, tyrosine and tryptophan biosynthesis
Selenocompound metabolism
D-Glutamine and D-glutamate metabolism
D-Alanine metabolism
Streptomycin biosynthesis
Peptidoglycan biosynthesis
Pyruvate metabolism
Propanoate metabolism
C5-Branched dibasic acid metabolism
One carbon pool by folate
Thiamine metabolism
Riboflavin metabolism
Vitamin B6 metabolism
Nicotinate and nicotinamide metabolism
Pantothenate and CoA biosynthesis
Lipoic acid metabolism
Folate biosynthesis
Terpenoid backbone biosynthesis
Aminoacyl-tRNA biosynthesis
Citrate cycle (TCA cycle)
Pentose phosphate pathway
Galactose metabolism
Fatty acid metabolism
Synthesis and degradation of ketone bodies
Purine metabolism
Pyrimidine metabolism
Alanine, aspartate and glutamate metabolism
Glycine, serine and threonine metabolism
Cysteine and methionine metabolism
Valine, leucine and isoleucine degradation
Valine, leucine and isoleucine biosynthesis
Lysine biosynthesis
Arginine and proline metabolism
Histidine metabolism
Phenylalanine, tyrosine and tryptophan biosynthesis
Selenocompound metabolism
D-Glutamine and D-glutamate metabolism
D-Alanine metabolism
Streptomycin biosynthesis
Peptidoglycan biosynthesis
Pyruvate metabolism
Propanoate metabolism
C5-Branched dibasic acid metabolism
One carbon pool by folate
Thiamine metabolism
Riboflavin metabolism
Vitamin B6 metabolism
Nicotinate and nicotinamide metabolism
Pantothenate and CoA biosynthesis
Lipoic acid metabolism
Folate biosynthesis
Terpenoid backbone biosynthesis
Aminoacyl-tRNA biosynthesis