Roseiflexus sp. RS-1
Names | Roseiflexus sp. RS-1 |
---|---|
Accession numbers | NC_009523 |
Background | Roseiflexus is a filamentous anoxygenic phototroph, one of the green filamentous bacteria. This lineage is placed on the deepest branch of all photosynthetic bacteria. RS-1 was isolated from a microbial mat in Octopus Spring, in Yellowstone National Park, U.S.A. It does not have chlorosomes, which are a type of light-harvesting structure. Comparative genomics indicates that it appears to have the genetic capacity for CO2 reduction via the 3-hydroxypropionate pathway (adapted in part from PubMed 17635550). (EBI Integr8) |
Taxonomy | |
Kingdom: | Bacteria |
Phylum: | Chloroflexi |
Class: | Chloroflexi |
Order: | Chloroflexales |
Family: | Chloroflexaceae |
Genus: | Roseiflexus |
Species: | RS-1 |
Strain | RS-1 |
Complete | Yes |
Sequencing centre | (06-JUN-2007) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA (20-APR-2007) US DOE Joint Genome Institute, 2800 Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA |
Sequencing quality | Level 6: Finished |
Sequencing depth | NA |
Sequencing method | Sanger |
Isolation site | Phototrophic microbial mats of Octopus Spring in Yellowstone National Park at 60?C |
Isolation country | USA |
Number of replicons | 1 |
Gram staining properties | Negative |
Shape | Bacilli |
Mobility | No |
Flagellar presence | NA |
Number of membranes | NA |
Oxygen requirements | Facultative |
Optimal temperature | NA |
Temperature range | Thermophilic |
Habitat | Specialized |
Biotic relationship | Free living |
Host name | NA |
Cell arrangement | Filaments |
Sporulation | Nonsporulating |
Metabolism | NA |
Energy source | Photoautotroph, Photosynthetic |
Diseases | NA |
Pathogenicity | No |
Glycolysis / Gluconeogenesis
Citrate cycle (TCA cycle)
Pentose phosphate pathway
Galactose metabolism
Fatty acid metabolism
Synthesis and degradation of ketone bodies
Ubiquinone and other terpenoid-quinone biosynthesis
Purine metabolism
Pyrimidine metabolism
Alanine, aspartate and glutamate metabolism
Glycine, serine and threonine metabolism
Cysteine and methionine metabolism
Valine, leucine and isoleucine degradation
Valine, leucine and isoleucine biosynthesis
Lysine biosynthesis
Arginine and proline metabolism
Histidine metabolism
Phenylalanine, tyrosine and tryptophan biosynthesis
Selenocompound metabolism
D-Glutamine and D-glutamate metabolism
D-Alanine metabolism
Streptomycin biosynthesis
Peptidoglycan biosynthesis
Pyruvate metabolism
Glyoxylate and dicarboxylate metabolism
C5-Branched dibasic acid metabolism
One carbon pool by folate
Carbon fixation pathways in prokaryotes
Thiamine metabolism
Vitamin B6 metabolism
Nicotinate and nicotinamide metabolism
Pantothenate and CoA biosynthesis
Lipoic acid metabolism
Folate biosynthesis
Porphyrin and chlorophyll metabolism
Terpenoid backbone biosynthesis
Sulfur metabolism
Aminoacyl-tRNA biosynthesis
Citrate cycle (TCA cycle)
Pentose phosphate pathway
Galactose metabolism
Fatty acid metabolism
Synthesis and degradation of ketone bodies
Ubiquinone and other terpenoid-quinone biosynthesis
Purine metabolism
Pyrimidine metabolism
Alanine, aspartate and glutamate metabolism
Glycine, serine and threonine metabolism
Cysteine and methionine metabolism
Valine, leucine and isoleucine degradation
Valine, leucine and isoleucine biosynthesis
Lysine biosynthesis
Arginine and proline metabolism
Histidine metabolism
Phenylalanine, tyrosine and tryptophan biosynthesis
Selenocompound metabolism
D-Glutamine and D-glutamate metabolism
D-Alanine metabolism
Streptomycin biosynthesis
Peptidoglycan biosynthesis
Pyruvate metabolism
Glyoxylate and dicarboxylate metabolism
C5-Branched dibasic acid metabolism
One carbon pool by folate
Carbon fixation pathways in prokaryotes
Thiamine metabolism
Vitamin B6 metabolism
Nicotinate and nicotinamide metabolism
Pantothenate and CoA biosynthesis
Lipoic acid metabolism
Folate biosynthesis
Porphyrin and chlorophyll metabolism
Terpenoid backbone biosynthesis
Sulfur metabolism
Aminoacyl-tRNA biosynthesis