Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)
Names | Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica) |
---|---|
Accession numbers | NC_008610 |
Background | Candidatus Ruthia magnifica str. 'Calyptogena magnifica'. This organism is an endosymbiont of the hydrothermal vent clam Calyptogena magnifica and will be used for comparative analysis with other bacterial endosymbionts. (NCBI BioProject: bp_list[1]) |
Taxonomy | |
Kingdom: | Bacteria |
Phylum: | Proteobacteria |
Class: | Gammaproteobacteria |
Order: | NA |
Family: | NA |
Genus: | NA |
Species: | magnifica |
Strain | Calyptogena magnifica |
Complete | Yes |
Sequencing centre | (04-DEC-2006) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA (29-NOV-2006) US DOE Joint Genome Institute, 2800 Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA |
Sequencing quality | Level 6: Finished |
Sequencing depth | NA |
Sequencing method | Sanger |
Isolation site | East Pacific 11 Rise, 9-N, during a December 2004 cruise |
Isolation country | NA |
Number of replicons | 1 |
Gram staining properties | Negative |
Shape | Cocci |
Mobility | No |
Flagellar presence | NA |
Number of membranes | NA |
Oxygen requirements | Aerobic |
Optimal temperature | NA |
Temperature range | Mesophilic |
Habitat | HostAssociated |
Biotic relationship | Symbiotic |
Host name | NA |
Cell arrangement | NA |
Sporulation | Nonsporulating |
Metabolism | Nitrogen fixation Sulfur oxidizer |
Energy source | Chemoautotroph |
Diseases | NA |
Pathogenicity | NA |
Citrate cycle (TCA cycle)
Purine metabolism
Pyrimidine metabolism
Alanine, aspartate and glutamate metabolism
Glycine, serine and threonine metabolism
Valine, leucine and isoleucine biosynthesis
Lysine biosynthesis
Histidine metabolism
Phenylalanine, tyrosine and tryptophan biosynthesis
D-Arginine and D-ornithine metabolism
D-Alanine metabolism
Lipopolysaccharide biosynthesis
Peptidoglycan biosynthesis
C5-Branched dibasic acid metabolism
One carbon pool by folate
Carbon fixation in photosynthetic organisms
Thiamine metabolism
Riboflavin metabolism
Vitamin B6 metabolism
Pantothenate and CoA biosynthesis
Biotin metabolism
Lipoic acid metabolism
Folate biosynthesis
Terpenoid backbone biosynthesis
Aminoacyl-tRNA biosynthesis
Purine metabolism
Pyrimidine metabolism
Alanine, aspartate and glutamate metabolism
Glycine, serine and threonine metabolism
Valine, leucine and isoleucine biosynthesis
Lysine biosynthesis
Histidine metabolism
Phenylalanine, tyrosine and tryptophan biosynthesis
D-Arginine and D-ornithine metabolism
D-Alanine metabolism
Lipopolysaccharide biosynthesis
Peptidoglycan biosynthesis
C5-Branched dibasic acid metabolism
One carbon pool by folate
Carbon fixation in photosynthetic organisms
Thiamine metabolism
Riboflavin metabolism
Vitamin B6 metabolism
Pantothenate and CoA biosynthesis
Biotin metabolism
Lipoic acid metabolism
Folate biosynthesis
Terpenoid backbone biosynthesis
Aminoacyl-tRNA biosynthesis